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new_model

new_model #14

Workflow file for this run

name: new_model
on: workflow_dispatch
jobs:
# create_new_branch:
# if: ${{ startsWith(github.event.issue.title, 'New Model:') && github.event.label.name != 'failed' && github.event.label.name != 'new-model' && github.event.label.name != 'update-model' }}
# runs-on: ubuntu-latest
# outputs:
# BRANCHNAME: ${{ steps.branch.outputs.branchName }}
# # All the issue form data
# MODELPATH: ${{ steps.get_path.outputs.path }}
# WEIGHTS: ${{ steps.get_weights.outputs.weights }}
# DOCKER: ${{ steps.get_docker.outputs.docker }}
# PYTHON: ${{ steps.python_scripts.outputs.pythons }}
# MODELINFO: ${{ env.model_info }}
# SAMPLEDATA: ${{ steps.get_data.outputs.sample_data }}
# PYTHONS: ${{ env.pythons }}
# CONFIG: ${{ steps.get_model_config.outputs.model_config }}
# TESTCOMMAND: ${{ steps.get_test_command.outputs.test_command }}
# steps:
# # This will automatically create a new branch from this issue, using custom config at /.github/issue-branch.yml 🟢
# - name: Create Issue Branch
# id: branch
# uses: robvanderleek/create-issue-branch@main
# env:
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
# # Set up Python 🟢
# - name: Set up Python
# uses: actions/setup-python@v4
# with:
# python-version: 3.11
# # Checkout the repository to the GitHub Actions runner 🟢
# - uses: actions/checkout@v4
# with:
# ref: ${{ steps.branch.outputs.branchName }}
# # Scrape the info from the issue 🟢
# - uses: stefanbuck/github-issue-parser@v3
# id: issue-parser
# with:
# template-path: .github/ISSUE_TEMPLATE/addModel.yml # optional but recommended
# # Scrape info from the form ��
# - name: Get the Path
# id: get_path
# run: echo "path=${{ steps.issue-parser.outputs.issueparser_path }}" >> $GITHUB_OUTPUT
# - name: Get the Weights
# id: get_weights
# run: echo "weights=${{ steps.issue-parser.outputs.issueparser_weights }}" >> $GITHUB_OUTPUT
# - name: Get docker folder
# id: get_docker
# run: echo "docker=${{ steps.issue-parser.outputs.issueparser_docker }}" >> $GITHUB_OUTPUT
# - name: Get Python Scripts
# id: python_scripts
# run: |
# echo "pythons<<EOF" >> $GITHUB_ENV
# echo "${{ steps.issue-parser.outputs.issueparser_python-scripts }}" >> $GITHUB_ENV
# echo "EOF" >> $GITHUB_ENV
# - name: Get Model Info
# id: get_model_info
# run: |
# echo "model_info<<EOF" >> $GITHUB_ENV
# echo "${{ steps.issue-parser.outputs.issueparser_model_info }}" >> $GITHUB_ENV
# echo "EOF" >> $GITHUB_ENV
# - name: Get Test Command
# id: get_test_command
# run: |
# echo "test_command=${{ steps.issue-parser.outputs.issueparser_testCommand }}" >> $GITHUB_OUTPUT
# - name: Get Sample Data
# id: get_data
# run: echo "sample_data=${{ steps.issue-parser.outputs.issueparser_sample-data }}" >> $GITHUB_OUTPUT
# - name: Get Config
# id: get_model_config
# run: |
# echo "model_config=${{ steps.issue-parser.outputs.issueparser_modelConfig }}" >> $GITHUB_OUTPUT
# push-model:
# needs: create_new_branch
# runs-on: ubuntu-latest
# steps:
# # Checkout the repository to the GitHub Actions runner to the new branch created for the issue 🟢
# - uses: actions/checkout@v4
# if: needs.create_new_branch.outputs.BRANCHNAME == ''
# with:
# ref: issue-${{ github.event.issue.number }}
# # If branchName is empty use issue number, else, use the branchName 🟢
# - uses: actions/checkout@v4
# if: needs.create_new_branch.outputs.BRANCHNAME != ''
# with:
# ref: ${{ needs.create_new_branch.outputs.BRANCHNAME }}
# # Install svn to clone subdir of github repos 🟢
# - name: Install svn
# run: sudo apt-get install subversion
# # Get svn url for exporting docker 🟢
# - name: Clone docker folder
# run: |
# url="${{ needs.create_new_branch.outputs.DOCKER }}"
# svn_url=$(echo "$url" | sed -E 's|/tree/[^/]+|/trunk|; s|/blob/[^/]+|/trunk|')
# svn export --force $svn_url ./${{ needs.create_new_branch.outputs.MODELPATH }}/docker
# # Get svn url for exporting 🟢
# - name: Generate Python SVN URLs
# id: generate_urls
# run: |
# echo "pythons2<<EOF" >> $GITHUB_ENV
# python ./.github/workflows/getPythonScripts.py >> $GITHUB_ENV
# echo "EOF" >> $GITHUB_ENV
# env:
# pythons: ${{ needs.create_new_branch.outputs.PYTHONS }}
# # Export the urls/clone the scripts 🟢
# - name: Clone python scripts
# run: |
# cd ./${{ needs.create_new_branch.outputs.MODELPATH }}
# svn_urls="${{ env.pythons2 }}"
# for svn_url in $svn_urls; do
# svn export --force $svn_url
# done
# # Get svn urls for exporting card and spec urls 🟢
# - name: Generate Model Info SVN URLs
# id: generate_model_info_urls
# run: |
# echo "model_info2<<EOF" >> $GITHUB_ENV
# python ./.github/workflows/getModelInfo.py >> $GITHUB_ENV
# echo "EOF" >> $GITHUB_ENV
# env:
# model_info: ${{ needs.create_new_branch.outputs.MODELINFO }}
# # Export the urls/clone the model info 🟢
# - name: Clone model info
# run: |
# model_info="${{ env.model_info2 }}"
# for svn_url in $model_info; do
# svn export --force $svn_url ./${{ needs.create_new_branch.outputs.MODELPATH }}
# done
# # Clone config files
# - name: Config file clone
# # Only run if needs.create_new_branch.outputs.CONFIG is not empty
# if: ${{ needs.create_new_branch.outputs.CONFIG != '' }}
# run: |
# mkdir ./${{ needs.create_new_branch.outputs.MODELPATH }}/config/
# url="${{ needs.create_new_branch.outputs.CONFIG }}"
# svn_url=$(echo "$url" | sed -E 's|/tree/[^/]+|/trunk|; s|/blob/[^/]+|/trunk|')
# svn export --force $svn_url ./${{ needs.create_new_branch.outputs.MODELPATH }}/config
# # Commit the new created files and folders to the branch needs.create_new_branch.outputs.BRANCHNAME 🟢
# - name: Commit and Push the new files
# run: |
# git config --global user.name "trained_models"
# git config --global user.email "trained_models"
# git add ${{ needs.create_new_branch.outputs.MODELPATH }}
# git commit -m "Added model files"
# git push origin ${{ needs.create_new_branch.outputs.BRANCHNAME }}
# build:
# needs: [create_new_branch, push-model]
# runs-on: ubuntu-latest
# steps:
# # Checkout the repository to the GitHub Actions runner 🟢
# - uses: actions/checkout@v3
# if: needs.create_new_branch.outputs.BRANCHNAME == ''
# with:
# ref: issue-${{ github.event.issue.number }}
# # If branchName is empty use issue number, else, use the branchName 🟢
# - uses: actions/checkout@v3
# if: needs.create_new_branch.outputs.BRANCHNAME != ''
# with:
# ref: ${{ needs.create_new_branch.outputs.BRANCHNAME }}
# # Set up Python
# - name: Set up Python
# uses: actions/setup-python@v4
# with:
# python-version: 3.11
# # Install yaml
# - name: Install yaml and oyaml
# run: |
# pip install pyyaml
# pip install oyaml
# # Install linkml
# - name: Install LinkML
# run: pip install linkml
# # Create model card and spec.yaml file
# - name: Validate model card and spec files
# run: |
# echo "## Model Card and Spec Validation :white_check_mark:" >> $GITHUB_STEP_SUMMARY
# echo "Model Card and spec yaml files are being validated here with LinkML Schema" >> $GITHUB_STEP_SUMMARY
# python ./.github/workflows/create_model_card_and_spec.py
# env:
# model_path: ${{ needs.create_new_branch.outputs.MODELPATH }}
# # Update the model's spec.yaml file
# - name: Update yaml file
# run: |
# model_name=$(echo "${{ needs.create_new_branch.outputs.MODELPATH }}" | awk -F '/' '{print $(NF-1)}')
# python ./.github/workflows/update_yaml_info.py ${{ needs.create_new_branch.outputs.MODELPATH }}/docker $model_name
# # Commit the changes (spec.yaml file and model card) 🟢
# - name: Commit changes
# run: |
# git config --global user.name "trained_models"
# git config --global user.email "trained_models"
# git add ${{ needs.create_new_branch.outputs.MODELPATH }}/spec.yaml
# git commit -m "Updated spec.yaml"
# git push origin ${{ needs.create_new_branch.outputs.BRANCHNAME }}
# build-docker:
# needs: [create_new_branch, push-model, build]
# runs-on: ubuntu-latest
# outputs:
# IMAGENAME: ${{ steps.set_image_name.outputs.image_name }}
# MODELNAME: ${{ steps.set_image_name.outputs.model_name }}
# steps:
# # Cleanup steps to free up disk space
# #- name: Cleanup disk space for large docker images
# #run: |
# #sudo rm -rf /usr/share/dotnet
# #sudo rm -rf /opt/ghc
# #sudo rm -rf "/usr/local/share/boost"
# #sudo rm -rf /opt/hostedtoolcache
# #sudo rm -rf "$AGENT_TOOLSDIRECTORY"
# #- name: Free Disk Space (Ubuntu)
# #uses: jlumbroso/free-disk-space@main
# #with:
# # this might remove tools that are actually needed,
# # if set to "true" but frees about 6 GB
# #tool-cache: false
# # all of these default to true, but feel free to set to
# # "false" if necessary for your workflow
# #android: true
# #dotnet: true
# #haskell: true
# #large-packages: true
# #docker-images: false
# # Checkout the repository to the GitHub Actions runner 🟢
# - uses: actions/checkout@v3
# if: needs.create_new_branch.outputs.BRANCHNAME == ''
# with:
# ref: issue-${{ github.event.issue.number }}
# # If branchName is empty use issue number, else, use the branchName 🟢
# - uses: actions/checkout@v3
# if: needs.create_new_branch.outputs.BRANCHNAME != ''
# with:
# ref: ${{ needs.create_new_branch.outputs.BRANCHNAME }}
# # Get image name 🟢
# - name: Set docker image name
# id: set_image_name
# run: |
# full_path="${{ needs.create_new_branch.outputs.MODELPATH }}"
# model_name=$(echo "$full_path" | awk -F '/' '{print $(NF-1)}')
# echo "image_name=neuronets/$model_name" >> $GITHUB_OUTPUT
# echo "model_name=$model_name" >> $GITHUB_OUTPUT
# push-weights:
# needs: [create_new_branch, push-model, build, build-docker]
# runs-on: ubuntu-latest
# steps:
# # Checkout the repository to the GitHub Actions runner to the new branch created for the issue 🟢
# - uses: actions/checkout@v3
# if: needs.create_new_branch.outputs.BRANCHNAME == ''
# with:
# ref: issue-${{ github.event.issue.number }}
# # If branchName is empty use issue number, else, use the branchName 🟢
# - uses: actions/checkout@v3
# if: needs.create_new_branch.outputs.BRANCHNAME != ''
# with:
# ref: ${{ needs.create_new_branch.outputs.BRANCHNAME }}
# # Set up Python
# - name: Set up Python
# uses: actions/setup-python@v4
# with:
# python-version: 3.11
# # Install datalad 🟢
# - name: Install Datalad
# id: testing
# run: |
# sudo apt-get install datalad
# python3 -m pip install datalad-osf
# pip install requests
# git config --global user.name "trained_models"
# git config --global user.email "trained_models"
# # Get file extensions for the weights and sample data
# # - name: Get extensions for weights
# # id: get_extensions_weights
# # run: |
# # echo "weights_ext<<EOF" >> $GITHUB_OUTPUT
# # python ./.github/workflows/getFileExtension.py "${{ needs.create_new_branch.outputs.WEIGHTS }}" >> $GITHUB_OUTPUT
# # echo "EOF" >> $GITHUB_OUTPUT
# # - name: Get extensions for sample data
# # id: get_extensions_sample_data
# # run: |
# # echo "sample_ext<<EOF" >> $GITHUB_OUTPUT
# # python ./.github/workflows/getFileExtension.py "${{ needs.create_new_branch.outputs.SAMPLEDATA }}" >> $GITHUB_OUTPUT
# # echo "EOF" >> $GITHUB_OUTPUT
# #Git annex addurl the weights
# - name: Git-annex/Datalad add the weights
# env:
# OSF_TOKEN: ${{ secrets.OSF_TOKEN }}
# run: |
# # datalad siblings
# mkdir ./${{ needs.create_new_branch.outputs.MODELPATH }}/weights
# cd ./${{ needs.create_new_branch.outputs.MODELPATH }}/weights
# # datalad download-url --overwrite -m "Added Weights" -O ./${{ needs.create_new_branch.outputs.MODELPATH }}/weights/best_model.${{ steps.get_extensions_weights.outputs.weights_ext }} "${{ needs.create_new_branch.outputs.WEIGHTS }}"
# datalad download-url --overwrite -m "Added Sample Dataset" "${{ needs.create_new_branch.outputs.WEIGHTS }}"
# datalad save . -m "Added model weights"
# #datalad push --to osf-annex2-storage
# datalad push --to origin
# - name: Git-annex/Datalad add the sample datasets
# env:
# OSF_TOKEN: ${{ secrets.OSF_TOKEN }}
# run: |
# mkdir ./${{ needs.create_new_branch.outputs.MODELPATH }}/example-data
# cd ./${{ needs.create_new_branch.outputs.MODELPATH }}/example-data
# # datalad download-url --overwrite -m "Added Sample Dataset" -O ./${{needs.create_new_branch.outputs.MODELPATH}}/example-data/sample.${{ steps.get_extensions_sample_data.outputs.sample_ext }} "${{needs.create_new_branch.outputs.SAMPLEDATA}}"
# datalad download-url --overwrite -m "Added Sample Dataset" "${{ needs.create_new_branch.outputs.SAMPLEDATA }}"
# datalad save . -m "Added sample data"
# #datalad push --to osf-annex2-storage
# datalad push --to origin
start-runner:
# needs: [create_new_branch, push-model, build, build-docker, push-weights]
runs-on: ubuntu-latest
outputs:
label: ${{ steps.start-ec2-runner.outputs.label }}
ec2-instance-id: ${{ steps.start-ec2-runner.outputs.ec2-instance-id }}
steps:
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@v1
with:
aws-access-key-id: ${{ secrets.AWS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_KEY_SECRET }}
aws-region: ${{ vars.AWS_REGION }}
- name: Start EC2 runner
id: start-ec2-runner
uses: machulav/ec2-github-runner@v2
with:
mode: start
github-token: ${{ secrets.GH_TOKEN }}
ec2-image-id: ${{ vars.AWS_IMAGE_ID }}
ec2-instance-type: ${{ vars.AWS_INSTANCE_TYPE }}
subnet-id: ${{ vars.AWS_SUBNET }}
security-group-id: ${{ vars.AWS_SECURITY_GROUP }}
test-model:
name: Do the job on the runner
# needs: [create_new_branch, push-model, build, build-docker, push-weights, start-runner] # required to start the main job when the runner is ready
needs: [start-runner]
runs-on: ${{ needs.start-runner.outputs.label }} # run the job on the newly created runner
steps:
# Setups singularity to the job to make it accessible to other steps
# Cleanup steps to free up disk space
- name: Cleanup disk space for large docker images
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf /opt/ghc
sudo rm -rf "/usr/local/share/boost"
sudo rm -rf /opt/hostedtoolcache
sudo rm -rf "$AGENT_TOOLSDIRECTORY"
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/free-disk-space@main
with:
# this might remove tools that are actually needed,
# if set to "true" but frees about 6 GB
tool-cache: false
# all of these default to true, but feel free to set to
# "false" if necessary for your workflow
android: true
dotnet: true
haskell: true
large-packages: true
docker-images: false
# - uses: actions/checkout@v3
# if: needs.create_new_branch.outputs.BRANCHNAME == ''
# with:
# ref: issue-${{ github.event.issue.number }}
# # If branchName is empty use issue number, else, use the branchName 🟢
# - uses: actions/checkout@v3
# # if: needs.create_new_branch.outputs.BRANCHNAME != ''
# # with:
# # ref: ${{ needs.create_new_branch.outputs.BRANCHNAME }}
- name: Install singularity
run: |
sudo apt-get update
wget https://github.com/sylabs/singularity/releases/download/v4.1.1/singularity-ce_4.1.1-focal_amd64.deb
sudo apt install ./singularity-ce_4.1.1-focal_amd64.deb -y
singularity version
docker version
# Build the Docker image 🟢
#- name: Build Docker image
#run: |
#docker build -t ${{ needs.build-docker.outputs.MODELNAME }} ./${{ needs.create_new_branch.outputs.MODELPATH }}/docker
#docker save --output ./${{ needs.create_new_branch.outputs.MODELPATH }}/docker/${{ needs.build-docker.outputs.MODELNAME }}.tar ${{ needs.build-docker.outputs.MODELNAME }}
# Convert the docker image to a singularity image
#- name: Convert docker image to singularity image
#run: |
#singularity build ./${{ needs.create_new_branch.outputs.MODELPATH }}/docker/${{ needs.build-docker.outputs.MODELNAME }}.sif docker-archive://./${{ needs.create_new_branch.outputs.MODELPATH }}/docker/${{ needs.build-docker.outputs.MODELNAME }}.tar
# Datalad get the sample dataset
#- name: Get sample dataset
#run: |
#sudo apt install python3-pip -y
#pip install datalad
#git config --global user.name "trained_models"
#git config --global user.email "trained_models"
#datalad get ./${{ needs.create_new_branch.outputs.MODELPATH }}/weights/
#datalad get ./${{ needs.create_new_branch.outputs.MODELPATH }}/example-data/
#sudo apt install unzip
#cd ./${{ needs.create_new_branch.outputs.MODELPATH }}/example-data/
#find . -name "*.zip" -exec unzip {} \;
# Push the dataset to the repo
#datalad save . -m "Added sample data"
#datalad push --to osf-annex2-storage
#datalad push --to origin
#- name: Get the weights
#run: |
#cd ./${{ needs.create_new_branch.outputs.MODELPATH }}/weights/
#find . -name "*.zip" -exec unzip {} \;
# Push the weights to the repo
#datalad save . -m "Added model weights"
#datalad push --to osf-annex2-storage
#datalad push --to origin
#- name: Collect Workflow Telemetry
#uses: runforesight/workflow-telemetry-action@v1
#with:
#job_summary: true
#proc_trace_sys_enable: true
#proc_trace_table_show: true
# Run in singularity the test command saved under needs.create_new_branch.outputs.DEEPCSR
- name: Run test command in Singularity
run: |
# Parent directory as a bind path in a env variable
#singularity exec --nv --bind /actions-runner,/actions-runner/_work/,/actions-runner/_work/${{ github.event.repository.name }}/${{ github.event.repository.name }}/${{ needs.create_new_branch.outputs.MODELPATH }}/,/actions-runner/_work/${{ github.event.repository.name }}/${{ github.event.repository.name }}/${{ needs.create_new_branch.outputs.MODELPATH }}/docker,/actions-runner/_work/${{ github.event.repository.name }}/${{ github.event.repository.name }}/${{ needs.create_new_branch.outputs.MODELPATH }}/weights,/actions-runner/_work/${{ github.event.repository.name }}/${{ github.event.repository.name }}/${{ needs.create_new_branch.outputs.MODELPATH }}/example-data:/output ./${{ needs.create_new_branch.outputs.MODELPATH }}/docker/${{ needs.build-docker.outputs.MODELNAME }}.sif ${{ needs.create_new_branch.outputs.TESTCOMMAND }}
docker login -u hvgazula -p dckr_pat_VpAuZs0gh1vNrzENg1b1wsAyWYk
# # singularity build ./${{ needs.create_new_branch.outputs.MODELPATH }}/docker/${{ needs.build-docker.outputs.MODELNAME }}.sif docker://hvgazula/test:tm-sim
# # singularity exec --nv --bind /actions-runner/_work/${{ github.event.repository.name }}/${{ github.event.repository.name }}:/output ./${{ needs.create_new_branch.outputs.MODELPATH }}/docker/${{ needs.build-docker.outputs.MODELNAME }}.sif ls
singularity build tm-sim.sif docker://hvgazula/test:tm-sim
singularity exec --bind /actions-runner/_work/:/output tm-sim.sif echo $PWD
singularity exec --bind /actions-runner/_work/:/output tm-sim.sif ls
singularity exec tm-sim.sif ls
echo 'github.workspace === ${{ github.workspace }}'
echo "GITHUB_WORKSPACE === $GITHUB_WORKSPACE"
echo 'runner.workspace === ${{ runner.workspace }}'
echo "RUNNER_WORKSPACE === $RUNNER_WORKSPACE"
# Load the Docker image 🟢
#- name: Load Docker image
#run: |
#docker load --input "./${{ needs.create_new_branch.outputs.MODELPATH }}/docker/${{ needs.build-docker.outputs.MODELNAME }}.tar"
#- name: Collect Workflow Telemetry
#uses: runforesight/workflow-telemetry-action@v1
#with:
#job_summary: true
#proc_trace_sys_enable: true
#proc_trace_table_show: true
# Test model with docker image as well
#- name: Run test command in Docker
#run: |
#docker run --gpus all -v /actions-runner/_work/${{ github.event.repository.name }}/${{ github.event.repository.name }}:/output ${{ needs.build-docker.outputs.MODELNAME }} "cd /output; ${{ needs.create_new_branch.outputs.TESTCOMMAND }}"
# Get model's version from model's path
#- name: Get model's version
#id: modelVersion
#run: |
# Get the version
#model_version=$(echo "${{ needs.create_new_branch.outputs.MODELPATH }}" | awk -F '/' '{print $(NF)}')
# Set the version as an output
#echo "model_version=$model_version" >> $GITHUB_OUTPUT
# Push the Docker image to Docker Hub (only if the PR is merged) ��
#- name: Push Docker image
#run: |
#docker login -u ${{ secrets.DOCKER_USERNAME }} -p ${{ secrets.DOCKER_PASSWORD }}
#docker tag ${{ needs.build-docker.outputs.MODELNAME }} ${{ needs.build-docker.outputs.IMAGENAME }}:${{ steps.modelVersion.outputs.model_version }}
#docker push ${{ needs.build-docker.outputs.IMAGENAME }}
stop-runner:
name: Stop self-hosted EC2 runner
# needs: [create_new_branch, push-model, build, build-docker, push-weights, start-runner, test-model] # required to wait when the main job is done
needs: [start-runner, test-model]
runs-on: ubuntu-latest
if: ${{ always() }}
# required to stop the runner even if the error happened in the previous jobs
steps:
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@v1
with:
aws-access-key-id: ${{ secrets.AWS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_KEY_SECRET }}
aws-region: ${{ vars.AWS_REGION }}
- name: Stop EC2 runner
uses: machulav/ec2-github-runner@v2
with:
mode: stop
github-token: ${{ secrets.GH_TOKEN }}
label: ${{ needs.start-runner.outputs.label }}
ec2-instance-id: ${{ needs.start-runner.outputs.ec2-instance-id }}
# failed:
# runs-on: ubuntu-latest
# needs: [create_new_branch, push-model, build, build-docker, push-weights, start-runner, test-model]
# if: ${{ failure() }}
# steps:
# - name: Set labels
# uses: actions-cool/issues-helper@v3
# with:
# actions: 'set-labels'
# token: ${{ secrets.GITHUB_TOKEN }}
# issue-number: ${{ github.event.issue.number }}
# labels: 'failed'
# - name: Create comment
# uses: actions-cool/issues-helper@v3
# with:
# actions: 'create-comment'
# token: ${{ secrets.GITHUB_TOKEN }}
# issue-number: ${{ github.event.issue.number }}
# body: |
# [This is an automated message] Hello @${{ github.event.issue.user.login }},
# 🔴 The folders/scripts you provided did not pass our tests. Please review the Action, and modify this issue's urls accordingly.
# When ready, just change the label of this issue to "Ready for testing".
# emoji: '+1,eyes'
# success:
# needs: [create_new_branch, push-model, build, build-docker, push-weights, start-runner, test-model, stop-runner]
# runs-on: ubuntu-latest
# steps:
# - name: Set labels
# uses: actions-cool/issues-helper@v3
# with:
# actions: 'set-labels'
# token: ${{ secrets.GITHUB_TOKEN }}
# issue-number: ${{ github.event.issue.number }}
# labels: 'success'
# - name: Create comment
# uses: actions-cool/issues-helper@v3
# with:
# actions: 'create-comment'
# token: ${{ secrets.GITHUB_TOKEN }}
# issue-number: ${{ github.event.issue.number }}
# body: |
# [This is an automated message] Hello @${{ github.event.issue.user.login }}. The workflow linked to adding your model finished successfully! Please double check that this issue's tag is "success."
# 🟢 A Draft PR should be linked to this issue. Now that your model passed the checks, feel free to change the status of the PR to "ready for review."
# ⭐ Thank you for adding a model to Nobrainer-Zoo!
# emoji: '+1,hooray,rocket'
##########################################
# This workflow will add a new model to the zoo
# The flow of the workflow is as follows:
# 1. Create a new branch from the issue
# 2. Scrape the info from the issue
# 3. Scrape info from the form
# 4. Push the new created files and folders to the branch
# 5. Build the model card and spec.yaml file
# 6. Update the model's spec.yaml file
# 7. Build the docker image
# 8. Push the weights and sample data to the datalad repo
# 9. Start the self-hosted runner
# 10. Test the model/Push docker image to dockerhub
# 11. Stop the self-hosted runner
# 12. If the model fails, add the failed label and comment
# 13. If the model succeeds, add the success label and comment