Update course book

neuromatch · Jun 20, 2024 · bb07d95 · bb07d95
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diff --git a/_images/dad3bebc96fcbe24e755bb47dbc8b942f99f9533baa02aa2566d83b48856a36d.png b/_images/dad3bebc96fcbe24e755bb47dbc8b942f99f9533baa02aa2566d83b48856a36d.png
diff --git a/_images/dc5d35cc4ad3db1bb12988e6ed9a0c1c7f729a32f56503d8820ab840a6719950.png b/_images/dc5d35cc4ad3db1bb12988e6ed9a0c1c7f729a32f56503d8820ab840a6719950.png
diff --git a/_images/de9271cbaa1fe94dfa252be6c9bf6b768964d238fe8cc222df4cd0207f8c33c5.png b/_images/de9271cbaa1fe94dfa252be6c9bf6b768964d238fe8cc222df4cd0207f8c33c5.png
diff --git a/_images/e7b87e04d1770258000c51e8f76f1d1fdb0a3ce700001629ed6d58611bbad725.png b/_images/e7b87e04d1770258000c51e8f76f1d1fdb0a3ce700001629ed6d58611bbad725.png
diff --git a/_images/fb6b9e49e24b930fdff8199257806d2c239203d65653e183e8b8de8ecf3615dc.png b/_images/fb6b9e49e24b930fdff8199257806d2c239203d65653e183e8b8de8ecf3615dc.png
diff --git a/_images/ff31c3e94ca056a63a8e5d12d84742e7fdd473941ddb7d12446d51c4dd740995.png b/_images/ff31c3e94ca056a63a8e5d12d84742e7fdd473941ddb7d12446d51c4dd740995.png
diff --git a/_sources/projects/professional_development/README.md b/_sources/projects/professional_development/README.md
@@ -1,43 +1,11 @@
 # Professional Development
 
-Professional development encompasses four different activities: Impact Talks, Mentor Meetings, Career Features and Career Panels. Use this guide to find out more about each activity and when and how to attend them!
-
-## Why Professional Development?
-
 Professional development enables students to connect and expand their experiences, skills and interest, broadening students’ perception of how they can make an impact via different career options. 
 
-Specifically, students will:
-
-* Watch recorded interviews on selected topics, relevant to a more just climate science
-* Reflect and share how they and their work may relate to those selected topics
-* Expand their views about career pathways via live panel discussions with professionals in climate-related fields
-* Meet with mentors with different career backgrounds
-* Expand their views about making impact by browsing different career profiles
-
-
-## Impact Talks
-
-**Recorded interviews** of practitioners sharing their perspectives on topics relevant to a more just climate science. Impact talks aim to foster discussion, reflection, and self-discovery inside and outside the course.
-
-Learn more about [Impact Talks](impact_talks.ipynb)
-
-
-## Mentor Meetings
-
-Professionals with experience in various climate-related fields **meet with student groups live** to share their career experiences. Mentor meetings aim to inspire and expand students’ perspectives, during and after the course.
-
-Learn more about [Mentor Meetings](mentors.md)
-
-
-## Career Features
-
-**Online spotlights** of diverse climate science practitioners to inspire students on climate actions and/or career paths. Career Features aim to inspire students in career exploration and to expand their views on making a positive impact.
-
-Learn more about [Career Features](career_features.md)
 
+## Mentorhip Program
 
-## Career Panels
+Professionals with experience in various fields **meet with student groups live** to share their career experiences. Mentor meetings aim to inspire and expand students’ perspectives, during and after the course.
 
-**Live panel discussions** with practitioners about their career paths with live Questions & Answers. Career Panels aim to inspire students in their career exploration and to expand their views on how to make a positive impact.
+Learn more about [Mentor Meetings](mentorship_program.md)
 
-Learn more about [Career Panels](career_panels.md)
diff --git a/_sources/projects/project-notebooks/ComparingNetworks.ipynb b/_sources/projects/project-notebooks/ComparingNetworks.ipynb
diff --git a/_sources/projects/project-notebooks/Macrocircuits.ipynb b/_sources/projects/project-notebooks/Macrocircuits.ipynb
diff --git a/_sources/projects/project-notebooks/Microlearning.ipynb b/_sources/projects/project-notebooks/Microlearning.ipynb
diff --git a/_sources/tutorials/TechnicalHelp/Links_Policy.md b/_sources/tutorials/TechnicalHelp/Links_Policy.md
@@ -2,32 +2,26 @@
 
 ## Quick links
 
-Course materials: [https://compneuro.neuromatch.io/](https://compneuro.neuromatch.io/)
+Course materials: [https://neuroai.neuromatch.io/](https://neuroai.neuromatch.io/)
 
 Portal: [https://portal.neuromatchacademy.org/](https://portal.neuromatchacademy.org/)
 
-Website: [https://academy.neuromatch.io/](https://academy.neuromatch.io/)
-
-Crowdcast: [https://www.crowdcast.io/e/neuromatch-academy-2022-](https://www.crowdcast.io/e/neuromatch-academy-2022-)
+Website: [https://neuromatch.io/](https://neuromatch.io/)
 
 Code of Conduct and Code of Conduct Violations Form: [https://github.com/NeuromatchAcademy/precourse/blob/main/CODE_OF_CONDUCT.md](https://github.com/NeuromatchAcademy/precourse/blob/main/CODE_OF_CONDUCT.md)
 
 Project Exemption Form: [https://airtable.com/shrubhlgsWJ8DuA7E](https://airtable.com/shrubhlgsWJ8DuA7E)
 
-Attendance Exemption Form: [https://airtable.com/shrlp9uktPR5o9U28](https://airtable.com/shrlp9uktPR5o9U28)
-
 
 
 ## Policies
 
 ### Coursework attendance policy
 
-Students who participate in this course will gain a certificate of completion for the coursework. Students are allowed to miss two days if necessary and if they communicate that with their teaching assistant.  If there are exceptional circumstances that force a student to miss class for reasons completely beyond their control, such as severe illness, electricity blackouts, etc, they can request to get the certificate despite missing more than two days by filling out the attendance exemption form ([https://airtable.com/shrlp9uktPR5o9U28](https://airtable.com/shrlp9uktPR5o9U28)) **at least two days prior to the end of course**. Please note these requests may not be granted.
+Students who participate in this course will gain a certificate of completion for the coursework. Students are allowed to miss two days if necessary and if they communicate that with their teaching assistant. If there are exceptional circumstances that force a student to miss class for reasons completely beyond their control, such as severe illness, electricity blackouts, etc, they can request to get the certificate despite missing more than two days by filling out the Attendance Waiver ([https://airtable.com/appQ20RmRMNxUVUTd/shrKlQX3PHW8OcTtg](https://airtable.com/appQ20RmRMNxUVUTd/shrKlQX3PHW8OcTtg)) **at least two days prior to the end of course**. Please note these requests may not be granted.
 
 ### Projects attendance policy
 
 Projects are an integral part of the Neuromatch Academy experience. Students who participate in projects and miss no more than two days of projects work will gain a certificate of completion for the projects. 
 
-If there are exceptional circumstances that make it difficult to attend the projects portion of the course, students can request to drop out of projects by filling out the project exemption form ([https://airtable.com/shrubhlgsWJ8DuA7E](https://airtable.com/shrubhlgsWJ8DuA7E)). If their request is granted, the student can continue to attend the coursework sections and gain a coursework certificate if eligible (see above), but not participate in the projects work.
-
-If the student participates in projects but misses more than two days due to exceptional circumstances, they can request to get the projects certificate anyway by filling out the attendance exemption form ([https://airtable.com/shrlp9uktPR5o9U28](https://airtable.com/shrlp9uktPR5o9U28)) **at least two days prior to the end of course**. Please note these requests may not be granted.
+If the student participates in projects but misses more than two days due to exceptional circumstances, they can request to get the projects certificate anyway by filling out the Attendance Waiver ([https://airtable.com/appQ20RmRMNxUVUTd/shrKlQX3PHW8OcTtg](https://airtable.com/appQ20RmRMNxUVUTd/shrKlQX3PHW8OcTtg)) **at least two days prior to the end of course**. Please note these requests may not be granted.
diff --git a/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Intro.ipynb b/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Intro.ipynb
@@ -142,8 +142,8 @@
     "from ipywidgets import widgets\n",
     "out = widgets.Output()\n",
     "with out:\n",
-    "    print(f\"If you want to download the slides: https://osf.io/download/fm4ys/\")\n",
-    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/fm4ys/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
+    "    print(f\"If you want to download the slides: https://osf.io/download/mrhny/\")\n",
+    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/mrhny/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
     "display(out)"
    ]
   },

diff --git a/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Tutorial1.ipynb b/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Tutorial1.ipynb
@@ -87,16 +87,17 @@
     "from ipywidgets import widgets\n",
     "out = widgets.Output()\n",
     "with out:\n",
-    "    print(f\"If you want to download the slides: https://osf.io/download/x4pa5/\")\n",
-    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/x4pa5/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
+    "    print(f\"If you want to download the slides: https://osf.io/download/vshxp/\")\n",
+    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/vshxp/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
     "display(out)"
    ]
   },
   {
    "cell_type": "markdown",
    "id": "ee444563-8ef0-4b20-b8d7-92eeace85488",
    "metadata": {
-    "execution": {}
+    "execution": {},
+    "jp-MarkdownHeadingCollapsed": true
    },
    "source": [
     "---\n",
@@ -2125,8 +2126,21 @@
    },
    "outputs": [],
    "source": [
+    "# Check if CUDA is available and set the device accordingly\n",
+    "device = torch.device(\"cuda\" if torch.cuda.is_available() else \"cpu\")\n",
+    "\n",
+    "# Move the model to the appropriate device\n",
+    "model.to(device)\n",
+    "\n",
+    "# move it to the same device\n",
+    "pixel_values = pixel_values.to(device)\n",
+    "\n",
+    "# Generate the sequence using the model\n",
     "best_sequence = model.generate(pixel_values)\n",
-    "processor.tokenizer.decode(best_sequence[0])"
+    "\n",
+    "# Decode the generated sequence\n",
+    "decoded_sequence = processor.tokenizer.decode(best_sequence[0])\n",
+    "print(decoded_sequence)"
    ]
   },
   {

diff --git a/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Tutorial2.ipynb b/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Tutorial2.ipynb
@@ -83,16 +83,17 @@
     "from ipywidgets import widgets\n",
     "out = widgets.Output()\n",
     "with out:\n",
-    "    print(f\"If you want to download the slides: https://osf.io/download/x4pa5/\")\n",
-    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/x4pa5/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
+    "    print(f\"If you want to download the slides: https://osf.io/download/vshxp/\")\n",
+    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/vshxp/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
     "display(out)"
    ]
   },
   {
    "cell_type": "markdown",
    "id": "4a35d5ac-7d05-4686-bf35-bde1bba0016a",
    "metadata": {
-    "execution": {}
+    "execution": {},
+    "jp-MarkdownHeadingCollapsed": true
    },
    "source": [
     "---\n",

diff --git a/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Tutorial3.ipynb b/_sources/tutorials/W1D1_Generalization/instructor/W1D1_Tutorial3.ipynb
@@ -82,16 +82,17 @@
     "from ipywidgets import widgets\n",
     "out = widgets.Output()\n",
     "with out:\n",
-    "    print(f\"If you want to download the slides: https://osf.io/download/x4pa5/\")\n",
-    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/x4pa5/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
+    "    print(f\"If you want to download the slides: https://osf.io/download/vshxp/\")\n",
+    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/vshxp/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
     "display(out)"
    ]
   },
   {
    "cell_type": "markdown",
    "id": "9b51b72e-386a-49ad-94e8-648d62124e1f",
    "metadata": {
-    "execution": {}
+    "execution": {},
+    "jp-MarkdownHeadingCollapsed": true
    },
    "source": [
     "---\n",
@@ -121,7 +122,7 @@
    "source": [
     "# @title Install and import feedback gadget\n",
     "\n",
-    "!pip install matplotlib numpy Pillow scipy ipywidgets tqdm --quiet\n",
+    "!pip install matplotlib numpy Pillow scipy ipywidgets vibecheck tqdm --quiet\n",
     "\n",
     "from vibecheck import DatatopsContentReviewContainer\n",
     "def content_review(notebook_section: str):\n",
@@ -1024,7 +1025,7 @@
     "\n",
     "Feinman and Lake (2020) propose to embed these assumptions into a generative model for how a single character is generated from strokes.\n",
     "\n",
-    "![Model parts](static/model_diagram.png)\n",
+    "<img src=\"https://github.com/neuromatch/NeuroAI_Course/blob/main/tutorials/W1D1_Generalization/static/model_diagram.png?raw=true\" width=600 />\n",
     "\n",
     "The result is a highly structured Bayesian generative model containing both discrete components (e.g. strokes) and continuous components (e.g. the location of the next stroke is a continuous variable). It combines symbolic primitives (strokes) as well as standard ANN components. This combination of using symbols and neural networks is known as a **neuro-symbolic** approach.\n",
     "\n",

diff --git a/_sources/tutorials/W1D2_ComparingTasks/instructor/W1D2_Intro.ipynb b/_sources/tutorials/W1D2_ComparingTasks/instructor/W1D2_Intro.ipynb
@@ -184,8 +184,8 @@
     "from ipywidgets import widgets\n",
     "out = widgets.Output()\n",
     "with out:\n",
-    "    print(f\"If you want to download the slides: https://osf.io/download/7r8v2/\")\n",
-    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/7r8v2/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
+    "    print(f\"If you want to download the slides: https://osf.io/download/gsuhq/\")\n",
+    "    display(IFrame(src=f\"https://mfr.ca-1.osf.io/render?url=https://osf.io/gsuhq/?direct%26mode=render%26action=download%26mode=render\", width=730, height=410))\n",
     "display(out)"
    ]
   }