Update course book

_sources/research-training/GitGitHub_workshop.md

@@ -0,0 +1,15 @@
+# Git & GitHub Workshop
+
+## Overview
+Open Sсience is a practice of making research products and processes available to all, which fosters collaborations, reproducibility, and equity. GitHub is an established and convenient platform for sharing your data, code (as a method), and results with the community. It is also crafted to facilitate efficient interaction with your lab mates for joint contributions. It uses Git under the hood - a version control system which simplifies
+In this workshop, we will learn how to use Git commands for creating and managing so-called repositories (where you store the materials); we will play around with branching and merging to empower you with collaborative techniques. We will then make the connection between local changes and a remote repository, located in GitHub, for others to see what you are working on and contribute on top of your findings. We will finish by exploring open-source repositories and how you can contribute to the computational tools today!
+
+
+## Speaker Bio
+
+**Hlib Solodzhuk**
+*Machine Learning Engineer*
+
+<img src="images/Hlib-headshot.jpeg" alt="Speaker Headshot" style="float: left; margin-right: 10px; width: 150px;"/>
+
+Hey! I’m Hlib Solodzhuk, a recently graduated undergrad from Ukrainian Catholic University in IT & Business Analytics. I'm also excited to be part of the team that created the NeuroAI and NASA Open Science courses at Neuromatch Academy - nice to meet you! I believe efficient collaboration is crucial for welcoming the research scientific environment and observing the power of GitHub usage in crafting the courses. I would love to share these tools with you during the workshop.

_sources/research-training/micropub_workshop.md

@@ -0,0 +1,4 @@
+# Micropublication workshop
+
+
+Information about the micropublication workshop will be shared as soon as possible. The workshop is scheduled for January.

_sources/research-training/workshops.md

@@ -1,4 +1,4 @@
-# Research Training 
+# Workshops 
 
 To help scholars succeed during the program and strengthen their skills, we are offering ***four exclusive workshops*** that will significantly enhance their abilities in essential research areas. These workshops are exclusively available to scholars and are not open to the general public. Each workshop will be *video recorded*, so scholars can revisit them later if unable to attend live. However, **we strongly encourage live attendance** for hands-on learning and to benefit from practical examples.
 
@@ -22,7 +22,6 @@ To help scholars succeed during the program and strengthen their skills, we are
 4. **Mastering Scientific Presentations**
    - **Date & Time:** 18th February 2025, 1:00-2:00 AM UTC and 1:00-2:00 PM UTC
     - **Note:** This workshop will be offered at two different times to accommodate scholars in various time zones.
-
 <br>
 
 ## Additional Opportunity:

genindex.html

@@ -199,8 +199,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

impact-scholars/Scholars-role_responsibilities.html

@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

impact-scholars/application.html

@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

impact-scholars/intro.html

@@ -201,8 +201,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

impact-scholars/mentoring_guidelines.html

@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

impact-scholars/mentors.html

@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

impact-scholars/scholars2023.html

@@ -63,7 +63,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Observing ECCO model vs tide gauges affected by Hurricane Maria" href="../scholar-outputs/2023/project2.html" />
-    <link rel="prev" title="Mastering Scientific Presentations Workshop" href="../research-training/oralPresentation_workshop.html" />
+    <link rel="prev" title="Micropublication workshop" href="../research-training/micropub_workshop.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   </head>
@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>
@@ -538,12 +540,12 @@ <h2>Seminar 4: 27th March, 21:00-23:00 UTC<a class="headerlink" href="#seminar-4
 
 <div class="prev-next-area">
     <a class="left-prev"
-       href="../research-training/oralPresentation_workshop.html"
+       href="../research-training/micropub_workshop.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Mastering Scientific Presentations Workshop</p>
+        <p class="prev-next-title">Micropublication workshop</p>
       </div>
     </a>
     <a class="right-next"

impact-scholars/structure.html

@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

output-guidelines/micropublications.html

@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

output-guidelines/seminar_guidelines.html

@@ -62,7 +62,7 @@
     <link rel="icon" href="../_static/NMA_logo.png"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Research Training" href="../research-training/workshops.html" />
+    <link rel="next" title="Workshops" href="../research-training/workshops.html" />
     <link rel="prev" title="Summary for the general public" href="summary_general_public.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>
@@ -449,7 +451,7 @@ <h2>Resources: how to give a short research talk?<a class="headerlink" href="#re
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Research Training</p>
+        <p class="prev-next-title">Workshops</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>

output-guidelines/summary_general_public.html

@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1 has-children"><a class="reference internal" href="../research-training/workshops.html">Workshops</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/Coding_workshop.html">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../research-training/oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../research-training/micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>

research-training/Coding_workshop.html

@@ -63,7 +63,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Mastering Scientific Presentations Workshop" href="oralPresentation_workshop.html" />
-    <link rel="prev" title="Research Training" href="workshops.html" />
+    <link rel="prev" title="Git &amp; GitHub Workshop" href="GitGitHub_workshop.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   </head>
@@ -200,8 +200,10 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Research Training</span></p>
 <ul class="current nav bd-sidenav">
 <li class="toctree-l1 current active has-children"><a class="reference internal" href="workshops.html">Workshops</a><details open="open"><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="GitGitHub_workshop.html">Git &amp; GitHub Workshop</a></li>
 <li class="toctree-l2 current active"><a class="current reference internal" href="#">Clean and Reproducible Code Workshop</a></li>
 <li class="toctree-l2"><a class="reference internal" href="oralPresentation_workshop.html">Mastering Scientific Presentations Workshop</a></li>
+<li class="toctree-l2"><a class="reference internal" href="micropub_workshop.html">Micropublication workshop</a></li>
 </ul>
 </details></li>
 </ul>
@@ -416,12 +418,12 @@ <h2>Speaker Bio<a class="headerlink" href="#speaker-bio" title="Link to this hea
 
 <div class="prev-next-area">
     <a class="left-prev"
-       href="workshops.html"
+       href="GitGitHub_workshop.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Research Training</p>
+        <p class="prev-next-title">Git &amp; GitHub Workshop</p>
       </div>
     </a>
     <a class="right-next"