Update to match neurodatascience/nipoppy:main #97
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…low` (nipoppy#229) * add dicom-checking functionality and fix logging things for testing * split console logging to stdout/stderr instead of just stdout * add options for using custom mapping or session-first DICOM directories for reorg/doughnut * fix Sphinx warnings * add tests for manifest validation * add tests for DicomDirMap * more tests + light refactor of participant/session strict validation * add test for invalid path to DicomDirMap * use Myst substitutions and default layout object for paths in docs * slightly update CLI argument descriptions * import Self from typing_extensions * also do `from __future__ import annotations`... * add Codecov config file
bcmcpher
approved these changes
May 31, 2024
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PR created/updated automatically by create-pull-request GitHub action. Will be merged automatically by automerge-action if there are no merge conflicts.