Update to match neurodatascience/nipoppy:main #67
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* verified shell check will work with planned data * wip - updated pybids parsing to use filter and only map requested subject. fixed parsing / printing errors * small update to parsing * updated tractoflow run script to scilus-flows_v1.5.0 (hopefully) * remove singularity call from nextflow b/c nextflow is in the container now * (hopefully) working version of updated tractoflow * removed submodule - no longer required w/ newer version * intial attempt to update tracker for updated tractoflow * *sigh* thank you codespell * added sample_bids_filter.json; modidifed how bids_filter is called; simplified tracker; redirected nextflow logs * updated tractoflow output directory to match other non-BIDS outputs (freesurfer in fmriprep) * moved the bids_filter_tractoflow.json location to generalize for pipelines
bcmcpher
approved these changes
Sep 29, 2023
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PR created/updated automatically by create-pull-request GitHub action. Will be merged automatically by automerge-action if there are no merge conflicts.