Update to match neurodatascience/nipoppy:main #100
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…oppy#263) * update manifest/doughnut columns (and DicomDirMap partially) * rename column `session` -> `session_id` in DicomDirMap * remove dicom_id and bids_id fields from doughnut * change sourcedata expected subdirectory names * rename check_session -> session_id_to_bids_id and participant_id_to_bids_id -> participant_id_to_bids_participant * refactor participant/session ID checking functions * rename bids_id -> bids_participant and session -> bids_session in invocations * update CLI arguments for participant/session * rename variables participant -> participant_id and session -> session_id * make test_default_config tests fail if replacement didn't work * rename column attributes in tabular classes (except Bagel) * rename VISIT/SESSION fields in global config * rename doughnut status columns * update raw dicom/imaging data directory to scratch/raw_imaging * add test for session_id_to_bids_session * address code review comments
bcmcpher
approved these changes
Jun 13, 2024
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PR created/updated automatically by create-pull-request GitHub action. Will be merged automatically by automerge-action if there are no merge conflicts.