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Revert "Updated formatting of download result files"
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This reverts commit 74d7423.
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@rmanaem
rmanaem committed Dec 5, 2024
1 parent 2e5d722 commit 7a40a68
Showing 1 changed file with 131 additions and 89 deletions.
220 changes: 131 additions & 89 deletions src/components/ResultContainer.tsx
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Original file line number Diff line number Diff line change
Expand Up @@ -145,104 +145,146 @@ function ResultContainer({
const tsvRows = [];
const datasets = response.responses.filter((res) => download.includes(res.dataset_uuid));

const isHumanFile = buttonIdentifier === 'cohort-participant';
if (buttonIdentifier === 'cohort-participant') {
const headers = [
'DatasetName',
'PortalURI',
'NumMatchingSubjects',
'SubjectID',
'SessionID',
'SessionFilePath',
'SessionType',
'Age',
'Sex',
'Diagnosis',
'Assessment',
'NumMatchingPhenotypicSessions',
'NumMatchingImagingSessions',
'SessionImagingModalities',
'SessionCompletedPipelines',
'DatasetImagingModalities',
'DatasetPipelines',
].join('\t');
tsvRows.push(headers);

const headers = [
'DatasetName',
'PortalURI',
'NumMatchingSubjects',
'SubjectID',
'SessionID',
'ImagingSessionPath',
'SessionType',
'NumMatchingPhenotypicSessions',
'NumMatchingImagingSessions',
'Age',
'Sex',
'Diagnosis',
'Assessment',
'SessionImagingModalities',
'SessionCompletedPipelines',
'DatasetImagingModalities',
'DatasetPipelines',
].join('\t');
tsvRows.push(headers);

datasets.forEach((res) => {
if (res.records_protected) {
tsvRows.push(
[
res.dataset_name.replace('\n', ' '),
res.dataset_portal_uri,
res.num_matching_subjects,
'protected', // subject_id
'protected', // session_id
'protected', // session_file_path
'protected', // session_type
'protected', // num_matching_phenotypic_sessions
'protected', // num_matching_imaging_sessions
'protected', // age
'protected', // sex
'protected', // diagnosis
'protected', // assessment
'protected', // session_imaging_modality
'protected', // session_completed_pipelines
isHumanFile
? convertURIToLabel('modality', res.image_modals)
: res.image_modals?.join(', '),
isHumanFile
? convertURIToLabel(
datasets.forEach((res) => {
if (res.records_protected) {
tsvRows.push(
[
res.dataset_name.replace('\n', ' '),
res.dataset_portal_uri,
res.num_matching_subjects,
'protected', // subject_id
'protected', // session_id
'protected', // session_file_path
'protected', // session_type
'protected', // age
'protected', // sex
'protected', // diagnosis
'protected', // assessment
'protected', // num_matching_phenotypic_sessions
'protected', // num_matching_imaging_sessions
'protected', // session_imaging_modality
'protected', // session_completed_pipelines
convertURIToLabel('modality', res.image_modals),
convertURIToLabel(
'pipeline',
parsePipelinesInfoToString(res.available_pipelines).split(', ')
),
].join('\t')
);
} else {
// @ts-expect-error: typescript doesn't know that subject_data is an array when records_protected is false.
res.subject_data.forEach((subject) => {
tsvRows.push(
[
res.dataset_name.replace('\n', ' '),
res.dataset_portal_uri,
res.num_matching_subjects,
subject.sub_id,
subject.session_id,
subject.session_file_path,
convertURIToLabel('sessionType', subject.session_type),
subject.age,
convertURIToLabel('sex', subject.sex),
convertURIToLabel('diagnosis', subject.diagnosis),
convertURIToLabel('assessment', subject.assessment),
subject.num_matching_phenotypic_sessions,
subject.num_matching_imaging_sessions,
convertURIToLabel('modality', subject.image_modal),
convertURIToLabel(
'pipeline',
parsePipelinesInfoToString(subject.completed_pipelines).split(', ')
),
convertURIToLabel('modality', res.image_modals),
convertURIToLabel(
'pipeline',
parsePipelinesInfoToString(res.available_pipelines).split(', ')
)
: parsePipelinesInfoToString(res.available_pipelines),
].join('\t')
);
} else {
// @ts-expect-error: typescript doesn't know that subject_data is an array when records_protected is false.
res.subject_data.forEach((subject) => {
),
].join('\t')
);
});
}
});
} else {
const headers = [
'DatasetName',
'PortalURI',
'SubjectID',
'SessionID',
'SessionFilePath',
'SessionType',
'NumMatchingPhenotypicSessions',
'NumMatchingImagingSessions',
'SessionImagingModalities',
'SessionCompletedPipelines',
'DatasetImagingModalities',
'DatasetPipelines',
].join('\t');
tsvRows.push(headers);

datasets.forEach((res) => {
if (res.records_protected) {
tsvRows.push(
[
res.dataset_name.replace('\n', ' '),
res.dataset_portal_uri,
res.num_matching_subjects,
subject.sub_id,
subject.session_id,
subject.session_file_path,
isHumanFile
? convertURIToLabel('sessionType', subject.session_type)
: subject.session_type,
subject.num_matching_phenotypic_sessions,
subject.num_matching_imaging_sessions,
subject.age,
isHumanFile ? convertURIToLabel('sex', subject.sex) : subject.sex,
isHumanFile ? convertURIToLabel('diagnosis', subject.diagnosis) : subject.diagnosis,
isHumanFile
? convertURIToLabel('assessment', subject.assessment)
: subject.assessment,
isHumanFile
? convertURIToLabel('modality', subject.image_modal)
: subject.image_modal?.join(', '),
isHumanFile
? convertURIToLabel(
'pipeline',
parsePipelinesInfoToString(subject.completed_pipelines).split(', ')
)
: parsePipelinesInfoToString(subject.completed_pipelines),
isHumanFile
? convertURIToLabel('modality', res.image_modals)
: res.image_modals?.join(', '),
isHumanFile
? convertURIToLabel(
'pipeline',
parsePipelinesInfoToString(res.available_pipelines).split(', ')
)
: parsePipelinesInfoToString(res.available_pipelines),
'protected', // subject_id
'protected', // session_id
'protected', // session_file_path
'protected', // session_type
'protected', // num_matching_phenotypic_sessions
'protected', // num_matching_imaging_sessions
'protected', // session_imaging_modality
'protected', // session_completed_pipelines
res.image_modals?.join(', '),
parsePipelinesInfoToString(res.available_pipelines),
].join('\t')
);
});
}
});
} else {
// @ts-expect-error: typescript doesn't know that subject_data is an array when records_protected is false.
res.subject_data.forEach((subject) => {
tsvRows.push(
[
res.dataset_name.replace('\n', ' '),
res.dataset_portal_uri,
subject.sub_id,
subject.session_id,
subject.session_file_path,
subject.session_type,
subject.num_matching_phenotypic_sessions,
subject.num_matching_imaging_sessions,
subject.image_modal?.join(', '),
parsePipelinesInfoToString(subject.completed_pipelines),
res.image_modals?.join(', '),
parsePipelinesInfoToString(res.available_pipelines),
].join('\t')
);
});
}
});
}

return tsvRows.join('\n');
}

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