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tests: add test for complex gaps#304

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ivan-aksamentov merged 8 commits intorustneherlab/treetime:rustfrom tests/complex-gapsneherlab/treetime:tests/complex-gapsCopy head branch name to clipboardJan 2, 2025

+374-23

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Commits on Dec 17, 2024

• tests: add test for complex gaps

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  967d23c

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Commits on Dec 22, 2024

• tests: added test with more indels

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  74c77aa

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• refactor: remove duplication

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  11c681f

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• tests: check composition against de-novo calculation

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  98cf416

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• refactor: add suggestions for refactor as inline comments

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  27cfc6d

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• refactor: add suggestions for refactor as inline comments in fitch forward

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  c0bb75e

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Commits on Dec 25, 2024

• tests: add another test on gaps with polytomies, fix double processing of indel bug in fitch

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  5f78227

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Commits on Dec 26, 2024

• fitch: adjust composition to contain include Ns present in all children

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  bdc1945

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