R-CMD-check

Resolve `pairwiseAlignment()` early and consistently #53

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Run time

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Job	Run time
macos-latest (release)	1m 50s
windows-latest (release)	4m 53s
ubuntu-latest (devel)	2m 26s
ubuntu-latest (release)	1m 58s
ubuntu-latest (oldrel-1)	2m 9s
	13m 16s