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1. dorado dorado Public

   Oxford Nanopore's Basecaller

   C++ 545 66

2. remora remora Public

   Methylation/modified base calling separated from basecalling.

   Python 159 21

3. medaka medaka Public

   Sequence correction provided by ONT Research

   Python 426 74

4. pod5-file-format pod5-file-format Public

   Pod5: a high performance file format for nanopore reads.

   C++ 139 19

5. fast-ctc-decode fast-ctc-decode Public

   Blitzing Fast CTC Beam Search Decoder

   Rust 178 27

6. bonito bonito Public

   A PyTorch Basecaller for Oxford Nanopore Reads

   Python 396 123