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  1. Intensify3D Intensify3D Public

    Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the experimenter). Intensify3D yields facilitated visualization…

    MATLAB 18 4

  2. PopRec PopRec Public

    Automatic neuron reconstruction pipeline of large 3D imaging datasets

    MATLAB 1

  3. TMD TMD Public

    Forked from BlueBrain/TMD

    Python

  4. Fiji-Macros Fiji-Macros Public

    A collection of macros I wrote or partially adapted from others.

    ImageJ Macro

  5. cellpose cellpose Public

    Forked from MouseLand/cellpose

    a generalist algorithm for cellular segmentation

    Jupyter Notebook

  6. single-cell_sib_scilifelab_2021 single-cell_sib_scilifelab_2021 Public

    Forked from NBISweden/single-cell_sib_scilifelab_2021

    SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/

    Jupyter Notebook