[LIMS] Clear sample list before synchronizing #1
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| --- | |
| # yamllint disable rule:line-length | |
| # Pin micromamba version to `1.5.10-0` because of following issue: | |
| # https://github.com/mamba-org/setup-micromamba/issues/225 | |
| name: UI | |
| "on": | |
| pull_request: null | |
| push: null | |
| jobs: | |
| format: | |
| name: JS-Format | |
| runs-on: ubuntu-latest | |
| # Skip `pull_request` runs on local PRs for which `push` runs are already triggered | |
| if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Conda environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: 1.5.10-0 | |
| environment-file: conda-environment.yml | |
| cache-environment: true | |
| post-cleanup: "all" | |
| - name: Cache UI dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/setup-pnpm/node_modules/.bin/store | |
| ~/.cache/Cypress | |
| key: cache-${{ runner.os }}-${{ hashFiles('pnpm-lock.yaml') }} | |
| restore-keys: ${{ runner.os }}- | |
| - name: Install UI dependencies | |
| run: "${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui install" | |
| - name: Run Prettier | |
| run: "${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui prettier" | |
| lint: | |
| name: JS-Lint | |
| runs-on: ubuntu-latest | |
| # Skip `pull_request` runs on local PRs for which `push` runs are already triggered | |
| if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Conda environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: 1.5.10-0 | |
| environment-file: conda-environment.yml | |
| cache-environment: true | |
| post-cleanup: "all" | |
| - name: Cache UI dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/setup-pnpm/node_modules/.bin/store | |
| ~/.cache/Cypress | |
| key: cache-${{ runner.os }}-${{ hashFiles('pnpm-lock.yaml') }} | |
| restore-keys: ${{ runner.os }}- | |
| - name: Install UI dependencies | |
| run: "${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui install" | |
| - name: Run ESLint | |
| # fail on warnings | |
| run: "${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui eslint --max-warnings=0" | |
| e2e: | |
| name: E2E-Test | |
| runs-on: ubuntu-latest | |
| # Skip `pull_request` runs on local PRs for which `push` runs are already triggered | |
| if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | |
| # Service containers to run with `container-job` | |
| services: | |
| # Label used to access the service container | |
| redis: | |
| # Docker Hub image | |
| image: redis | |
| # Set health checks to wait until redis has started | |
| options: >- | |
| --health-cmd "redis-cli ping" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| # Maps port 6379 on service container to the host | |
| - 6379:6379 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Conda environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: 1.5.10-0 | |
| environment-file: conda-environment.yml | |
| cache-environment: true | |
| post-cleanup: "all" | |
| - name: Install MXCuBE | |
| run: "${MAMBA_EXE} run --name mxcubeweb poetry install --only main" | |
| - name: Cache UI dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/setup-pnpm/node_modules/.bin/store | |
| ~/.cache/Cypress | |
| key: cache-${{ runner.os }}-${{ hashFiles('pnpm-lock.yaml') }} | |
| restore-keys: ${{ runner.os }}- | |
| - name: Install UI dependencies | |
| run: "${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui install" | |
| - name: Build UI | |
| run: "${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui build" | |
| - name: Start MXCuBE-Web server | |
| run: | | |
| ${MAMBA_EXE} run --name mxcubeweb mxcubeweb-server -r ./demo/ --static-folder $(pwd)/ui/build/ -L debug & | |
| ${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui exec wait-on http://127.0.0.1:8081 | |
| - name: Run Cypress | |
| run: "${MAMBA_EXE} run --name mxcubeweb pnpm --prefix ui e2e" | |
| env: | |
| CYPRESS_BASE_URL: http://127.0.0.1:8081 | |
| - uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: debug | |
| retention-days: 3 | |
| path: | | |
| ui/cypress/debug | |
| debug |