Materials for the 2019 incoming student training week. Trello. Slack.
Make sure you complete the FIU Neuro Onboarding!
We also recommend that you at least start learning some programming with Codecademy. The free courses "Learn the Command Line", "Learn Python 2" (although we use Python 3), and "Learn git" are all extremely useful.
| Time | Title | Instructor(s) |
|---|---|---|
| 09:30 | Welcome and Overview | Dr. Angela Laird |
| 10:30 | Dependencies | Taylor Salo |
| 12:30 | Lunch Break | |
| 13:30 | Open Science | Dr. Angela Laird |
| 14:30 | FAIR Principles | Dr. Angela Laird |
| 15:30 | Program Resources | Drs. Anthony Dick and Aaron Mattfeld |
| 16:00 | Community Resources | Taylor Salo |
| Time | Title | Instructor(s) |
|---|---|---|
| 09:30 | Basic Command Line | Dr. Michael Riedel |
| 10:30 | Basics of HPC/SLURM | Dr. Michael Riedel |
| 11:30 | Basic Python | Amanda Renfro |
| 12:30 | Lunch Break | |
| 13:30 | Working with Python Packages | Amanda Renfro |
| 14:30 | Data Visualization | Katherine Bottenhorn |
| 15:30 | Overflow Time/Programming Practice |
| Time | Title | Instructor(s) |
|---|---|---|
| 09:30 | MRI Physics | Dr. Robert Laird |
| 10:00 | MRI Data Types | Dr. Angela Laird |
| 10:30 | BIDS | Dr. Michael Riedel |
| 11:30 | Working with Neuroimaging Data in Python | Taylor Salo |
| 12:30 | Lunch Break | |
| 13:30 | fMRI Preprocessing | Dr. Aaron Mattfeld |
| 15:30 | Data Quality Control | Dr. Michael Riedel |
| Time | Title | Instructor(s) |
|---|---|---|
| 09:30 | fMRI Modeling and GLMs | Dr. Jessica Bartley |
| 12:30 | Lunch Break | |
| 13:30 | Structural MRI Analysis | Dr. Anthony Dick |
| 13:30 | Breakout Session: ID Conn | Katherine Bottenhorn |
| Time | Title | Instructor(s) |
|---|---|---|
| 09:30 | Basics of Docker/Singularity | Adam Kimbler |
| 10:30 | git/GitHub | Katherine Bottenhorn |
| 12:30 | Lunch Break | |
| 13:30 | git/GitHub, continued | Katherine Bottenhorn |
| 14:30 | Overflow Time/General Q&A | |
| 15:30 | Closing Comments | Dr. Angela Laird |