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Bug fix in pseudo-bulk, added calcNMI and ligerToH5AD #124

Bug fix in pseudo-bulk, added calcNMI and ligerToH5AD

Bug fix in pseudo-bulk, added calcNMI and ligerToH5AD #124

Triggered via push June 24, 2024 19:59
Status Failure
Total duration 21m 35s
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r.yml

on: push
Matrix: build
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13 errors and 18 warnings
macOS-latest (release)
No such keg: /opt/homebrew/Cellar/r
macOS-latest (release)
Warning: parse error in file 'lines':
macOS-latest (release)
Test failures
macOS-latest (release)
R CMD check found ERRORs
macOS-latest (release)
Process completed with exit code 1.
ubuntu-latest (release)
Warning: parse error in file 'lines':
ubuntu-latest (release)
Test failures
ubuntu-latest (release)
R CMD check found ERRORs
ubuntu-latest (release)
Process completed with exit code 1.
windows-latest (release)
Warning: parse error in file 'lines':
windows-latest (release)
Test failures
windows-latest (release)
R CMD check found ERRORs
windows-latest (release)
Process completed with exit code 1.
macOS-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (release)
parse error in file 'lines':
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
ubuntu-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ubuntu-latest (release)
parse error in file 'lines':
windows-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (release)
parse error in file 'lines':
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4: