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@TheJaeger TheJaeger released this 14 Jan 21:40
· 56 commits to master since this release
v1.0-RC12
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Learn about vigilant mode.

This version removes the requirement to separate multiple inputs with a comma. Instead of parsing arguments as

pydesigner -s --rpe_pairs 1 --verbose -o [PATH TO OUTPUT] /media/sid/Secondary/Datasets/Sid_Brain/nifti/18_DKI_BIPOLAR_2mm_64dir_62slices.nii,media/sid/Secondary/Datasets/Sid_Brain/nifti/19_DKI_BIPOLAR_2mm_topup_PA.nii

users can now replace the comma delimiter with space

pydesigner -s --rpe_pairs 1 --verbose -o [PATH TO OUTPUT] /media/sid/Secondary/Datasets/Sid_Brain/nifti/18_DKI_BIPOLAR_2mm_64dir_62slices.nii media/sid/Secondary/Datasets/Sid_Brain/nifti/19_DKI_BIPOLAR_2mm_topup_PA.nii

The new processing syntax is:

pydesigner [OPTIONS] $DWI1 $DWI2 $DWI3

Logic to handle datasets with multiple echo times (multi-TE) has also been overhauled to enable processing of certain problematic datasets. Documentation has also been updated to reflect new files and flags.

  • None

Changed

  • Fixed a logic in multi-TE detection algorithm that prevented certain
    datasets from processing
  • Overhauled how inputs paths are entered. Paths to input DWIs can now
    be provided to PyDesigner without comma separation

Removed

  • None
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