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PyDesigner v0.3
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@TheJaeger TheJaeger released this 10 Apr 02:37
· 110 commits to master since this release
v0.3
d031b91
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Learn about vigilant mode.

Added:

  • Head motion plot from on eddy_qc outputs
  • Outlier plot from IRRLS outlier detection
  • Updated documentation
  • Option to reslice DWI with --reslice [x,y,z]

Changed:

  • Flag --epiboost [index] changed to --rpe_pairs n, where
    users can specify the number of reverse phase encoded B0 pairs to
    use in EPI correction. Non-indexed B0s were previously destructively
    removed from DWI, leading to incorrect weighing of B0s in tensor
    estimation. The new method now preserves all B0s, thereby allowing
    faster EPI distortion correction without degrading DTI/DKI maps.
  • Documentation moved to ReadTheDocs
  • Moved B0 production module from designer.preprocessing.brainmask to
    a separate function at designer.preprocessing.extractmeanbzero()
    that gets called by PyDesigner main. This allows a B0.nii to be
    produced regardless of the --mask flag.

Removed:

  • Documentation inconsistencies
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