renaming censoring_type to censor #29
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: test-coverage | |
| permissions: | |
| contents: read | |
| actions: write | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: 'true' | |
| R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RETICULATE_AUTOCONFIGURE: 'FALSE' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Homebrew and qpdf (macOS only) | |
| if: runner.os == 'macOS' | |
| uses: Homebrew/actions/setup-homebrew@master | |
| - name: Install qpdf (macOS only) | |
| if: runner.os == 'macOS' | |
| shell: bash | |
| run: brew install qpdf | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| shell: bash | |
| run: | | |
| . /etc/os-release | |
| while read -r cmd | |
| do | |
| echo "$cmd" | |
| sudo $cmd | |
| done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-coverage-{{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-r-coverage- | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::covr | |
| any::xml2 | |
| any::remotes | |
| any::reticulate | |
| any::rcmdcheck | |
| any::sessioninfo | |
| any::devtools | |
| - name: Cache Python environment | |
| if: runner.os == 'Linux' || runner.os == 'macOS' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.virtualenvs | |
| key: ${{ runner.os }}-python-env-coverage-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-python-env-coverage- | |
| - name: Cache Python environment (Windows) | |
| if: runner.os == 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: '%LOCALAPPDATA%/r-reticulate' | |
| key: ${{ runner.os }}-python-env-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-python-env- | |
| - name: Install greta and dependencies | |
| shell: Rscript {0} | |
| run: | | |
| install.packages("greta", repos = c("https://greta-dev.r-universe.dev", "https://cloud.r-project.org")) | |
| library(greta) | |
| install_greta_deps(timeout = 120) | |
| - name: Generate coverage report | |
| shell: Rscript {0} | |
| run: | | |
| library(covr) | |
| cov <- covr::package_coverage(quiet = FALSE, clean = FALSE) | |
| covr::to_cobertura(cov, output_file = "coverage.xml") | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| fail_ci_if_error: true | |
| files: coverage.xml | |
| disable_search: true | |
| verbose: true |