more updates to fix r-cmd #16
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| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| schedule: | |
| - cron: '1 23 * * Sun' | |
| name: R-CMD-check | |
| defaults: | |
| run: | |
| shell: Rscript {0} | |
| jobs: | |
| R-CMD-check: | |
| name: ${{ matrix.os }}, R-${{ matrix.r}} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| runs-on: ${{ matrix.config.os }} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: 'true' | |
| R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RETICULATE_AUTOCONFIGURE: 'FALSE' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install Homebrew (macOS only) | |
| if: runner.os == 'macOS' | |
| uses: Homebrew/actions/setup-homebrew@master | |
| - name: Install qpdf (macOS only) | |
| if: runner.os == 'macOS' | |
| shell: bash | |
| run: brew install qpdf | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| shell: bash | |
| run: | | |
| . /etc/os-release | |
| while read -r cmd | |
| do | |
| echo "$cmd" | |
| sudo $cmd | |
| done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | |
| - name: Install greta dependencies | |
| shell: Rscript {0} | |
| run: | | |
| install.packages("greta", repos = c("https://greta-dev.r-universe.dev", "https://cloud.r-project.org")) | |
| library(greta) | |
| install_greta_deps(timeout = 120) | |
| - name: Verify Greta Environment | |
| run: | | |
| library(greta) | |
| greta::greta_sitrep() | |
| shell: Rscript {0} | |
| - name: Install package + deps | |
| run: remotes::install_local(dependencies = TRUE, force = TRUE) | |
| - name: R CMD check | |
| run: rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check') | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) |