more updates to fix r-cmd #16
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| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: test-coverage | |
| permissions: read-all | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::covr | |
| any::xml2 | |
| any::remotes | |
| - name: Install system dependencies | |
| shell: bash | |
| run: | | |
| . /etc/os-release | |
| while read -r cmd | |
| do | |
| echo "$cmd" | |
| sudo $cmd | |
| done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | |
| - name: Install package + deps | |
| run: remotes::install_local(dependencies = TRUE, force = TRUE) | |
| shell: Rscript {0} | |
| - name: Install greta deps | |
| run: | | |
| library(greta) | |
| greta::install_greta_deps(timeout = 50) | |
| shell: Rscript {0} | |
| - name: Situation Report on greta install | |
| run: greta::greta_sitrep() | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| cov <- covr::package_coverage( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | |
| ) | |
| covr::to_cobertura(cov) | |
| shell: Rscript {0} | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | |
| file: ./cobertura.xml | |
| plugin: noop | |
| disable_search: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |