updating r-cmd check to install homebrew and qpdf #11
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| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| schedule: | |
| - cron: '1 23 * * Sun' | |
| name: R-CMD-check | |
| defaults: | |
| run: | |
| shell: Rscript {0} | |
| jobs: | |
| R-CMD-check: | |
| name: ${{ matrix.os }}, tf-${{ matrix.tf }}, R-${{ matrix.r}} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: 'ubuntu-latest', tf: 'default', r: 'release'} | |
| - {os: 'windows-latest', tf: 'default', r: 'release'} | |
| - {os: 'macOS-latest', tf: 'default', r: 'release'} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.tf == 'nightly' || contains(matrix.tf, 'rc') || matrix.r == 'devel' }} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: 'true' | |
| R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| r-version: ${{ matrix.r }} | |
| Ncpus: '2L' | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| id: r-package-cache | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.os }}-${{ steps.setup-r.outputs.installed-r-version }}-${{ github.run_id }} | |
| - name: Install remotes | |
| if: steps.r-package-cache.outputs.cache-hit != 'true' | |
| run: install.packages("remotes") | |
| # Install Homebrew and qpdf on macOS | |
| - name: Install Homebrew and qpdf | |
| if: runner.os == 'macOS' | |
| run: | | |
| # Install Homebrew if not already installed | |
| if ! command -v brew &> /dev/null; then | |
| echo "Installing Homebrew..." | |
| /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)" | |
| else | |
| echo "Homebrew already installed." | |
| fi | |
| # Ensure Homebrew is updated | |
| brew update | |
| # Install qpdf | |
| brew install qpdf | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| shell: bash | |
| run: | | |
| . /etc/os-release | |
| while read -r cmd | |
| do | |
| echo "$cmd" | |
| sudo $cmd | |
| done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | |
| - name: Install package + deps | |
| run: remotes::install_local(dependencies = TRUE, force = TRUE) | |
| - name: Install greta deps | |
| run: | | |
| library(greta) | |
| greta::install_greta_deps(timeout = 50) | |
| - name: Situation Report on greta install | |
| run: greta::greta_sitrep() | |
| - name: Install rcmdcheck | |
| run: remotes::install_cran("rcmdcheck") | |
| - name: R CMD check | |
| run: rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check') | |
| - name: Show testthat output | |
| if: always() | |
| shell: bash | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| - name: Don't use tar from old Rtools to store the cache | |
| if: ${{ runner.os == 'Windows' && startsWith(steps.setup-r.outputs.installed-r-version, '3') }} | |
| shell: bash | |
| run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH | |
| - name: Check on single core machine | |
| if: runner.os != 'Windows' | |
| env: | |
| R_PARALLELLY_AVAILABLE_CORES: 1 | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-multiarch")) | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) |