updating, running roxygen2 and adding censored files #2
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| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: macOS-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v1 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes")) | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("covr") | |
| shell: Rscript {0} | |
| ### | |
| - name: Install Miniconda | |
| run: | | |
| install.packages(c("remotes", "keras")) | |
| reticulate::install_miniconda() | |
| shell: Rscript {0} | |
| - name: Set options for conda binary for macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| echo "options(reticulate.conda_binary = reticulate:::miniconda_conda())" >> .Rprofile | |
| # Perhaps here is where we can install / change the environment that we are | |
| # installing into? Can we call our own greta install functions here? | |
| - name: Install TensorFlow | |
| run: | | |
| reticulate::conda_create(envname = "greta-env",python_version = "3.7") | |
| reticulate::conda_install(envname = "greta-env", packages = c("numpy==1.16.4", "tensorflow-probability==0.7.0", "tensorflow==1.14.0")) | |
| shell: Rscript {0} | |
| - name: Python + TF details | |
| run: | | |
| Rscript -e 'tensorflow::tf_config()' | |
| Rscript -e 'tensorflow::tf_version()' | |
| Rscript -e 'reticulate::py_module_available("tensorflow_probability")' | |
| Rscript -e 'reticulate::py_config()' | |
| ### | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |