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xpd
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ms609 committed Aug 22, 2024
1 parent 3eaa33f commit ce7ab76
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions vignettes/using-distances.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -216,11 +216,11 @@ testTrees <- list(
bigErr = ape::read.tree(text = '(a, (c, (((b, d), (f, h)), (e, g))));')
)
VisualizeMatching(MutualClusteringInfo, testTrees$trueTree, testTrees$lackRes)
points(4, 7.5, pch = 2, cex = 3, col = "#E69F00")
points(4, 7.5, pch = 2, cex = 3, col = "#E69F00", xpd = NA)
VisualizeMatching(MutualClusteringInfo, testTrees$trueTree, testTrees$smallErr)
points(4, 7.5, pch = 3, cex = 3, col = "#56B4E9")
points(4, 7.5, pch = 3, cex = 3, col = "#56B4E9", xpd = NA)
VisualizeMatching(MutualClusteringInfo, testTrees$trueTree, testTrees$bigErr)
points(4, 7.5, pch = 4, cex = 3, col = "#009E73")
points(4, 7.5, pch = 4, cex = 3, col = "#009E73", xpd = NA)
```

Better trees plot vertically towards the "100% shared information" vertex.
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