Strain calculation & display #562
Workflow file for this run
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| schedule: | |
| - cron: "24 06 * * 1" | |
| push: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "memcheck**" | |
| - "docs**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**R-CMD-check.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "memcheck**" | |
| - "docs**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**R-CMD-check.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: '4.1', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: true # Seemingly not set by --as-cran | |
| _R_CHECK_FORCE_SUGGESTS_: false # CRAN settings | |
| R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
| _R_CHECK_THINGS_IN_CHECK_DIR_: false | |
| R_REMOTES_STANDALONE: true | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout git repo | |
| uses: actions/checkout@v2 | |
| # https://github.com/r-lib/actions/issues/534 | |
| - name: Remove TreeDistData from DESCRIPTION - pak bug workaround | |
| if: runner.os != 'MacOS' | |
| run: | | |
| sed -i "s/ TreeDistData.*/ glue,/" DESCRIPTION # glue as placeholder | |
| - name: Remove TreeDistData from DESCRIPTION (Mac) | |
| if: runner.os == 'MacOS' | |
| run: | | |
| brew install gnu-sed | |
| gsed -i "s/ TreeDistData.*/ glue,/" DESCRIPTION # glue as placeholder | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Install apt packages (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install \ | |
| texlive-latex-base texlive-fonts-recommended libcurl4-openssl-dev | |
| - name: pak bug workaround - install pak # https://github.com/r-lib/actions/issues/534 | |
| run: | | |
| install.packages("pak") | |
| install.packages("pkgdepends") | |
| shell: Rscript {0} | |
| - name: pak bug workaround - install TreeDist (CRAN) | |
| if: runner.os == 'Windows' | |
| run: pak::pkg_install("TreeDist") | |
| shell: Rscript {0} | |
| - name: pak bug workaround - install TreeDistData | |
| run: pak::pkg_install("ms609/TreeDistData") | |
| shell: Rscript {0} | |
| - name: Set up R dependencies (Windows) | |
| if: runner.os == 'Windows' | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| TreeDistData=?ignore-before-r=99.0.0 | |
| needs: | | |
| check | |
| coverage | |
| - name: Set up R dependencies (Non-Windows) | |
| if: runner.os != 'Windows' | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| TreeDistData=?ignore-before-r=99.0.0 | |
| phangorn=?ignore-before-r=4.1.0 | |
| needs: | | |
| check | |
| - name: Restore suggests-TreeDistData (Mac) | |
| if: runner.os == 'MacOS' | |
| run: | | |
| gsed -i "s/ glue,/ TreeDistData,/" DESCRIPTION | |
| - name: Restore suggests-TreeDistData (non-Mac) | |
| if: runner.os != 'MacOS' | |
| run: | | |
| sed -i "s/ glue,/ TreeDistData,/" DESCRIPTION | |
| - name: Set up pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Check package | |
| uses: r-lib/actions/check-r-package@v2 | |
| - name: Code coverage | |
| if: runner.os == 'Windows' | |
| run: covr::codecov() | |
| shell: Rscript {0} |