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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,19 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: B.1.23 | ||
| unaliased_name: A.1.1.1.23 | ||
| parent: B.1 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 27935 | ||
| nucleotide: A | ||
| - pos: 64171 | ||
| nucleotide: G | ||
| - pos: 73235 | ||
| nucleotide: T | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: PP754993 | ||
| isolate: WA-UW-288850 | ||
| - source: genbank | ||
| accession: PQ036000 | ||
| isolate: MPXV/PT0823/2024 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: D.1 | ||
| unaliased_name: A.1.1.1.6.1 | ||
| parent: B.1.6 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 10945 | ||
| nucleotide: A | ||
| - pos: 39515 | ||
| nucleotide: A | ||
| - pos: 44627 | ||
| nucleotide: T | ||
| - pos: 56276 | ||
| nucleotide: A | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: OQ503831 | ||
| isolate: MPXV/Human/USA/CA-LACPHL-MA00408/2023 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: E.1 | ||
| unaliased_name: A.1.1.1.3.1.1.1 | ||
| parent: C.1.1 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 13563 | ||
| nucleotide: A | ||
| - pos: 121394 | ||
| nucleotide: T | ||
| - pos: 162280 | ||
| nucleotide: A | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: OR804499 | ||
| isolate: MPV/PT0732/2023 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: E.2 | ||
| unaliased_name: A.1.1.1.3.1.1.2 | ||
| parent: C.1.1 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 13563 | ||
| nucleotide: A | ||
| - pos: 151847 | ||
| nucleotide: A | ||
| - pos: 37738 | ||
| nucleotide: T | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: OR487983 | ||
| isolate: MPXV/PT0661/2023 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: E.3 | ||
| unaliased_name: A.1.1.1.3.1.1.3 | ||
| parent: C.1.1 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 142797 | ||
| nucleotide: T | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: OR326991 | ||
| isolate: MPXV/PT0627/2023 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: F.1 | ||
| unaliased_name: A.1.1.1.20.1 | ||
| parent: B.1.20 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 11668 | ||
| nucleotide: A | ||
| - pos: 35132 | ||
| nucleotide: A | ||
| - pos: 70414 | ||
| nucleotide: T | ||
| - pos: 70666 | ||
| nucleotide: T | ||
| - pos: 96938 | ||
| nucleotide: T | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: PP533295 | ||
| isolate: NY-NYCPHL-001231 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,14 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: F.2 | ||
| unaliased_name: A.1.1.1.20.2 | ||
| parent: B.1.20 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 161629 | ||
| nucleotide: A | ||
| - pos: 22167 | ||
| nucleotide: T | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: PQ160003 | ||
| isolate: hMpxV/USA/CA-CDPH-1M1000491/2023 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,14 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: F.3 | ||
| unaliased_name: A.1.1.1.20.3 | ||
| parent: B.1.20 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 174050 | ||
| nucleotide: T | ||
| - pos: 180618 | ||
| nucleotide: T | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: OR473623 | ||
| isolate: hMpxV/USA/IL-RIPHL-MPXV-050-0081/2023 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: F.4 | ||
| unaliased_name: A.1.1.1.20.4 | ||
| parent: B.1.20 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 34277 | ||
| nucleotide: T | ||
| - pos: 92382 | ||
| nucleotide: T | ||
| - pos: 122551 | ||
| nucleotide: T | ||
| - pos: 126919 | ||
| nucleotide: A | ||
| - pos: 176643 | ||
| nucleotide: A | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: PP556326 | ||
| isolate: hMpxV/USA/IL-RIPHL-050-0153/2024 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: F.5 | ||
| unaliased_name: A.1.1.1.20.5 | ||
| parent: B.1.20 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| - pos: 150831 | ||
| nucleotide: T | ||
| - pos: 126169 | ||
| nucleotide: A | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: PQ160004 | ||
| isolate: hMpxV/USA/CA-CDPH-1M1000492/2023 | ||
| - source: genbank | ||
| accession: PP533312 | ||
| isolate: NY-NYCPHL-001278 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| # yaml-language-server: $schema=../schemas/single_lineage/lineage_schema_1-0-0.yml | ||
| name: F.6 | ||
| unaliased_name: A.1.1.1.20.6 | ||
| parent: B.1.20 | ||
| designation_date: "2024-11-05" | ||
| defining_snps: | ||
| # G146690A, C159608T, G168964A | ||
| - pos: 146690 | ||
| nucleotide: A | ||
| - pos: 159608 | ||
| nucleotide: T | ||
| - pos: 168964 | ||
| nucleotide: A | ||
| reference_sequences: | ||
| - source: genbank | ||
| accession: OR665162 | ||
| isolate: MpxV/human/USA/WA-UW-097833/2023 |