.travis.yml

language: R
sudo: false
cache:
  directories: /tmp/deps
  packages: true
env:
  - NOT_CRAN=true
before_install:
  - sudo apt-get update
  - sudo apt-get install libopenblas-dev libgsl-dev liblapack-dev
    # enter directory for installing all dependencies
  - pushd /tmp/deps
    # install ADMIXTOOLS
  - curl -LO https://github.com/DReichLab/AdmixTools/archive/v5.0.tar.gz
  - tar xf v5.0.tar.gz
  - cd AdmixTools-5.0
  - cd src; make clobber; make LDLIBS="-llapack" all; make install; cd ../
  - curl -LO https://www.dropbox.com/s/2m53dharng61ou9/AdmixTools_Example_Data.tar_.gz
  - tar xf AdmixTools_Example_Data.tar_.gz
  - export PATH=$PATH:$PWD/bin
  - cd ../
    # install bedtools
  - curl -LO https://github.com/arq5x/bedtools2/releases/download/v2.27.1/bedtools-2.27.1.tar.gz
  - tar -zxvf bedtools-2.27.1.tar.gz
  - pushd bedtools2 && make && popd
  - export PATH=$PATH:$PWD/bedtools2/bin/
    # return to the top directory
  - popd
after_success:
  - Rscript -e 'covr::codecov()'