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@mpieva

MPI EVA Bioinformatics

Minerva Research Group for Bioinformatics at the Max Planck Institute for Evolutionary Anthropology

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  1. mapAD mapAD Public

    An aDNA aware short-read mapper

    Rust 19

  2. mapping-iterative-assembler mapping-iterative-assembler Public

    Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

    C 16 7

  3. biohazard-tools biohazard-tools Public

    Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

    Haskell 7 1

  4. network-aware-bwa network-aware-bwa Public

    the Burrows Wheeler Aligner with networking capabilities

    C 5 3

  5. quicksand quicksand Public

    A pipeline for the analysis of sedimentary ancient mtDNA

    Nextflow 5 2

  6. matchseq matchseq Public

    Perl scripts for reconstructing the structure of double-stranded DNA fragments from single-stranded DNA libraries

    Perl 2 1

Repositories

Showing 10 of 27 repositories
  • mapAD Public

    An aDNA aware short-read mapper

    mpieva/mapAD’s past year of commit activity
    Rust 19 MIT 0 0 0 Updated Dec 15, 2024
  • quicksand Public

    A pipeline for the analysis of sedimentary ancient mtDNA

    mpieva/quicksand’s past year of commit activity
    Nextflow 5 MIT 2 2 0 Updated Nov 19, 2024
  • quicksand-build Public

    The mpieva/quicksand helper pipeline

    mpieva/quicksand-build’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Sep 23, 2024
  • network-aware-bwa Public

    the Burrows Wheeler Aligner with networking capabilities

    mpieva/network-aware-bwa’s past year of commit activity
    C 5 GPL-3.0 3 0 1 Updated Jun 8, 2022
  • biohazard Public

    Udo Stenzel's biohazard — a Haskell library for bioinformatics [MIRROR]

    mpieva/biohazard’s past year of commit activity
    Haskell 0 BSD-3-Clause 0 0 0 Updated Apr 5, 2022
  • index_swapping Public

    Perl script for identifying cross-contamination events that occurred between double-index libraries due to index swapping during library amplification or sequencing.

    mpieva/index_swapping’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Nov 5, 2021
  • biohazard-tools Public

    Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

    mpieva/biohazard-tools’s past year of commit activity
    Haskell 7 BSD-3-Clause 1 0 0 Updated Mar 18, 2021
  • nuclear_sediment_pipeline Public

    Scripts used within the sediment capture pipeline

    mpieva/nuclear_sediment_pipeline’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 26, 2021
  • matchseq Public

    Perl scripts for reconstructing the structure of double-stranded DNA fragments from single-stranded DNA libraries

    mpieva/matchseq’s past year of commit activity
    Perl 2 MIT 1 0 0 Updated May 15, 2020
  • swot Public Forked from JetBrains/swot

    Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.

    mpieva/swot’s past year of commit activity
    Kotlin 0 MIT 24,162 0 0 Updated Apr 15, 2020
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