Update regex

morrislab · Oct 23, 2020 · c7ea04c · c7ea04c
1 parent a6ecd0c
commit c7ea04c
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/qapa/extract.py b/qapa/extract.py
@@ -117,7 +117,7 @@ def _join_names(self):
 def get_stripped_name(name):
     # If Gencode tables are supplied, the Ensembl transcript ID has a
     # version number appended to the ID. We want to strip this out.
-    match = re.match('ENS\w*T\d+', name)
+    match = re.match(r'ENS\w*T\d+', name)
     if match:
         return match.group()
     return name

diff --git a/tests/python/test_qapa.py b/tests/python/test_qapa.py
@@ -59,14 +59,14 @@ def test_fasta(self, mock_fasta):
 
     @patch('os.system')
     def test_quant(self, mock_sys):
-        # should call create_merged_data.R and compute_pau.R 
+        # should call create_merged_data.R and compute_pau.R
         db = NamedTemporaryFile()
         args = qapa.getoptions(['quant', '--db', db.name, 'test_1.sf',
                                 'test_2.sf'])
         qapa.quant(args)
-        self.assertRegexpMatches(mock_sys.call_args_list[0][0][0],
+        self.assertRegex(mock_sys.call_args_list[0][0][0],
             r'create_merged_data.R')
-        self.assertRegexpMatches(mock_sys.call_args_list[1][0][0],
+        self.assertRegex(mock_sys.call_args_list[1][0][0],
             r'compute_pau.R')