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2 changes: 1 addition & 1 deletion _sources/misc/changelog.md
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Major changes are listed below. Each release likely contains fiddling with back-end code,
updates to latest `fwdpp` version, etc.

## 0.21.1
## 0.21.2

Bug fixes

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2 changes: 1 addition & 1 deletion intro.html
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Expand Up @@ -491,7 +491,7 @@ <h2>Version<a class="headerlink" href="#version" title="Permalink to this headin
</div>
</details>
<div class="cell_output docutils container">
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&#39;0.22.1&#39;
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&#39;0.21.2&#39;
</pre></div>
</div>
</div>
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2 changes: 1 addition & 1 deletion long_vignettes/gss_vignette.html
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Expand Up @@ -530,7 +530,7 @@ <h1>Gaussian stabilizing selection with an optimum shift</h1>
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5868/3211716.py:30: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5931/3211716.py:30: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
fwdpy11.evolvets(rng, pop, params, 100, recorder=r, suppress_table_indexing=True)
</pre></div>
</div>
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4 changes: 2 additions & 2 deletions long_vignettes/pyfreqtracker.html
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Expand Up @@ -556,7 +556,7 @@ <h2> Contents </h2>
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5891/1851285822.py:13: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5958/1851285822.py:13: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
fwdpy11.evolvets(
</pre></div>
</div>
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</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5891/3466431268.py:15: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5958/3466431268.py:15: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
fwdpy11.evolvets(
</pre></div>
</div>
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2 changes: 1 addition & 1 deletion long_vignettes/pyfreqtracker_sqlite.html
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Expand Up @@ -819,7 +819,7 @@ <h2>A class to track mutations frequencies via a database<a class="headerlink" h
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5911/1492076354.py:16: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5982/1492076354.py:16: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
fwdpy11.evolvets(
</pre></div>
</div>
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2 changes: 1 addition & 1 deletion long_vignettes/tskit_metadata_vignette.html
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Expand Up @@ -531,7 +531,7 @@ <h2>Setting up a model<a class="headerlink" href="#setting-up-a-model" title="Pe
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/9ef18ca8c086631cd355516fd6889f0dd6480175d42b388a6ac6c72681121725.png" src="../_images/9ef18ca8c086631cd355516fd6889f0dd6480175d42b388a6ac6c72681121725.png" />
<img alt="../_images/cd71893236ba774de5f64cef919aac507bd9a43bea96a9efbcb26bb2c902900e.png" src="../_images/cd71893236ba774de5f64cef919aac507bd9a43bea96a9efbcb26bb2c902900e.png" />
</div>
</div>
<p>(<code class="docutils literal notranslate"><span class="pre">graph</span></code> is a <a class="reference external" href="https://popsim-consortium.github.io/demes-docs/main/api.html#demes.Graph" title="(in Python)"><code class="xref py py-class docutils literal notranslate"><span class="pre">demes.Graph</span></code></a>.)</p>
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6 changes: 3 additions & 3 deletions misc/changelog.html
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Expand Up @@ -459,7 +459,7 @@ <h2> Contents </h2>
</div>
<nav aria-label="Page">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id1">0.21.1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id1">0.21.2</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id2">0.21.0</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id3">0.20.1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id4">0.20.0</a></li>
Expand Down Expand Up @@ -595,7 +595,7 @@ <h1>Changelog<a class="headerlink" href="#changelog" title="Permalink to this he
<p>Major changes are listed below. Each release likely contains fiddling with back-end code,
updates to latest <code class="docutils literal notranslate"><span class="pre">fwdpp</span></code> version, etc.</p>
<section id="id1">
<h2>0.21.1<a class="headerlink" href="#id1" title="Permalink to this heading">#</a></h2>
<h2>0.21.2<a class="headerlink" href="#id1" title="Permalink to this heading">#</a></h2>
<p>Bug fixes</p>
<ul class="simple">
<li><p>Fix internal error validating distributions of effect sizes for multi-deme models
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</div>
<nav class="bd-toc-nav page-toc">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id1">0.21.1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id1">0.21.2</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id2">0.21.0</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id3">0.20.1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#id4">0.20.0</a></li>
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8 changes: 4 additions & 4 deletions pages/advancedtopics.html
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Expand Up @@ -631,7 +631,7 @@ <h2>Executing multiple replicates in parallel using <code class="docutils litera
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>16
</pre></div>
</div>
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_5975/116052154.py:20: UserWarning: Applying a default demographic model where deme sizes are [1000] and the burn-in length is 10*1000
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6056/116052154.py:20: UserWarning: Applying a default demographic model where deme sizes are [1000] and the burn-in length is 10*1000
fwdpy11.evolvets(rng, pop, params, 100)
</pre></div>
</div>
Expand Down Expand Up @@ -669,16 +669,16 @@ <h2>Executing multiple replicates in parallel using <code class="docutils litera
-0.010349104565670205 -2.2118130398591935
-0.011602139413926871 -7.084718822750244
-0.0032279509968761435 -1.737328013826212
-0.015449207258832993 -5.131892545676067
-0.015449207258832993 -5.131892545676068
-0.0077168400201644664 4.512341872600712
-0.0022531736886723442 -4.0967214493294986
-0.0022531736886723442 -4.096721449329499
-0.006044053890735736 -8.652700112679995
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-0.009716042965590406 -7.443653191909565
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-0.01597600966131924 4.99434887087133
-0.01597600966131924 4.994348870871331
-0.003548690338568886 1.3665737289445181
-0.005819804232148941 8.384444628613952
</pre></div>
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2 changes: 1 addition & 1 deletion searchindex.js

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2 changes: 1 addition & 1 deletion short_vignettes/evolvets_vignette.html
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Expand Up @@ -542,7 +542,7 @@ <h2>Our model<a class="headerlink" href="#our-model" title="Permalink to this he
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6176/3378162748.py:1: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6296/3378162748.py:1: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
fwdpy11.evolvets(rng, pop, params, simplification_interval=100)
</pre></div>
</div>
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Expand Up @@ -522,7 +522,7 @@ <h1>The multivariate Gaussian distribution</h1>
</div>
</details>
<div class="cell_output docutils container">
<img alt="../_images/6f8fe239350e3c26ef8a8e50898fe53af5a1bbd535e388536649f54986ada87d.png" src="../_images/6f8fe239350e3c26ef8a8e50898fe53af5a1bbd535e388536649f54986ada87d.png" />
<img alt="../_images/c98b98d84a5ff185b587dc95ad56633331597a4a298e75b75e7613f63b49eea2.png" src="../_images/c98b98d84a5ff185b587dc95ad56633331597a4a298e75b75e7613f63b49eea2.png" />
</div>
</div>
<p>Let’s set up a dictionary to hold the parameters of our model:</p>
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2 changes: 1 addition & 1 deletion short_vignettes/multivariate_lognormal_effect_sizes.html
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Expand Up @@ -536,7 +536,7 @@ <h1>The multivariate lognormal distribution</h1>
</div>
</details>
<div class="cell_output docutils container">
<img alt="../_images/c7ea1d2ba73cbd61f421f315a3feb305cdd2517a1216a78a198ab4c83933f672.png" src="../_images/c7ea1d2ba73cbd61f421f315a3feb305cdd2517a1216a78a198ab4c83933f672.png" />
<img alt="../_images/62bbfa76619ce9d1c6826300c3bdf0f8499a370d87312f2e566f4cf1a08d7c1e.png" src="../_images/62bbfa76619ce9d1c6826300c3bdf0f8499a370d87312f2e566f4cf1a08d7c1e.png" />
</div>
</div>
<div class="cell docutils container">
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2 changes: 1 addition & 1 deletion short_vignettes/mutationdominance_vignette.html
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Expand Up @@ -539,7 +539,7 @@ <h2>Example<a class="headerlink" href="#example" title="Permalink to this headin
</div>
</details>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6359/3929228882.py:26: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6516/3929228882.py:26: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
fwdpy11.evolvets(rng, pop, params, 100, suppress_table_indexing=True)
</pre></div>
</div>
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2 changes: 1 addition & 1 deletion short_vignettes/neutralmutsafter_vignette.html
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Expand Up @@ -514,7 +514,7 @@ <h2> Contents </h2>
</div>
</details>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6405/1513603297.py:28: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6565/1513603297.py:28: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
fwdpy11.evolvets(rng, pop, params, 100, suppress_table_indexing=True)
</pre></div>
</div>
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12 changes: 6 additions & 6 deletions short_vignettes/poptour_vignette.html
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Expand Up @@ -529,7 +529,7 @@ <h2> Contents </h2>
</div>
</details>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6425/1427492698.py:28: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6589/1427492698.py:28: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
fwdpy11.evolvets(rng, pop, params, 100, suppress_table_indexing=True)
</pre></div>
</div>
Expand Down Expand Up @@ -563,11 +563,11 @@ <h2>Mutations<a class="headerlink" href="#mutations" title="Permalink to this he
</div>
</div>
<div class="cell_output docutils container">
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&lt;fwdpy11._fwdpy11.Mutation at 0x7fc30c209f30&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7fc30c20b8f0&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7fc30c209bb0&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7fc30c20a2b0&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7fc30c20a330&gt;]
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&lt;fwdpy11._fwdpy11.Mutation at 0x7f1e283a26b0&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7f1e283a2af0&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7f1e283a2bf0&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7f1e283a23b0&gt;,
&lt;fwdpy11._fwdpy11.Mutation at 0x7f1e2835def0&gt;]
</pre></div>
</div>
</div>
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2 changes: 1 addition & 1 deletion short_vignettes/recapitation.html
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Expand Up @@ -489,7 +489,7 @@ <h1>Finishing a simulation with msprime</h1>
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6447/2763561539.py:13: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6613/2763561539.py:13: UserWarning: Applying a default demographic model where deme sizes are [100] and the burn-in length is 10*100
fwdpy11.evolvets(rng, pop, params, 100, preserve_first_generation=True)
</pre></div>
</div>
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6 changes: 3 additions & 3 deletions short_vignettes/recorders_vignette.html
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Expand Up @@ -590,7 +590,7 @@ <h2> Contents </h2>
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6468/1469769122.py:2: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6637/1469769122.py:2: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
fwdpy11.evolvets(rng, pop, params, recorder=recorder, simplification_interval=100)
</pre></div>
</div>
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</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6468/2266145962.py:7: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_6637/2266145962.py:7: UserWarning: Applying a default demographic model where deme sizes are [500] and the burn-in length is 10*500
fwdpy11.evolvets(rng, pop, params, recorder=recorder, simplification_interval=100)
</pre></div>
</div>
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</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/d4582f8d8ae00cb7db48fa96860c78eff868e5de4ef5cbfc837eb0c0c4a87755.png" src="../_images/d4582f8d8ae00cb7db48fa96860c78eff868e5de4ef5cbfc837eb0c0c4a87755.png" />
<img alt="../_images/9bc20d8b992d1f64c1785cb0dcf6fac69da640660d736d26f81f71f404ca8258.png" src="../_images/9bc20d8b992d1f64c1785cb0dcf6fac69da640660d736d26f81f71f404ca8258.png" />
</div>
</div>
<section id="built-in-ancient-sample-recorders">
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4 changes: 3 additions & 1 deletion short_vignettes/trackmutationfates.html
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Expand Up @@ -667,7 +667,9 @@ <h3>Recording all generations of the mutation’s sojourn<a class="headerlink" h
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>4.0 1000
4.0 3 0
5.0 1000
</pre></div>
</div>
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>5.0 1000
5.0 2 0
6.0 1000
6.0 2 0
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Expand Up @@ -556,7 +556,7 @@ <h2>Different effect sizes in different demes.<a class="headerlink" href="#diffe
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[-1.23803866e-03 -7.39281499e-05 -2.41840432e-03]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[0.00032197 0.00093734 0.00187441]
</pre></div>
</div>
</div>
Expand All @@ -569,9 +569,9 @@ <h2>Different effect sizes in different demes.<a class="headerlink" href="#diffe
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[0.0099708 0.00120865 0.02232523]
[0.00120865 0.00248364 0.00607853]
[0.02232523 0.00607853 0.0617186 ]]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[0.01004108 0.00117568 0.02245378]
[0.00117568 0.00250853 0.00618197]
[0.02245378 0.00618197 0.06256446]]
</pre></div>
</div>
</div>
Expand All @@ -584,9 +584,9 @@ <h2>Different effect sizes in different demes.<a class="headerlink" href="#diffe
</div>
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[1. 0.24288008 0.89995939]
[0.24288008 1. 0.49096075]
[0.89995939 0.49096075 1. ]]
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[1. 0.23425449 0.89585048]
[0.23425449 1. 0.49346158]
[0.89585048 0.49346158 1. ]]
</pre></div>
</div>
</div>
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