remove scipy as a dependency

molpopgen · Apr 10, 2024 · 7641599 · 7641599
1 parent e58215e
commit 7641599
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diff --git a/fwdpy11/_types/table_collection.py b/fwdpy11/_types/table_collection.py
@@ -2,7 +2,6 @@
 from typing import Iterable
 
 import numpy as np
-import scipy.sparse  # type: ignore
 
 from .._fwdpy11 import Edge, MutationRecord, Node, Site, ll_TableCollection
 
@@ -182,6 +181,7 @@ def _ndfs(
         later.
         """
         from . import TreeIterator
+        import scipy.sparse  # type: ignore
 
         shapes = tuple(len(i) + 1 for i in samples)
         dok_JFS = [scipy.sparse.dok_matrix(shapes, dtype=np.int32) for i in windows]

diff --git a/pyproject.toml b/pyproject.toml
@@ -26,7 +26,6 @@ dependencies = [
     "attrs >= 20.3.0",
     "black",
     "numpy < 2.0",
-    "scipy",
     "tskit >= 0.5.6",
     "demes ~= 0.2.2",
     "Deprecated",

diff --git a/requirements/minimal_install_requirements.txt b/requirements/minimal_install_requirements.txt
@@ -3,5 +3,4 @@ attrs >= 20.3.0
 demes == 0.2.2
 numpy < 2
 tskit >= 0.5.6
-scipy
 Deprecated