fix test (part 5)

molgenis · Jul 20, 2017 · 257e36f · 257e36f
1 parent 27ee915
commit 257e36f
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/protocols/CreateExternSamplesProjects.sh b/protocols/CreateExternSamplesProjects.sh
@@ -38,8 +38,8 @@ set -e
 set -u
 
 umask 0007
-module load "${ngsUtilsVersion}"
-module load "${ngsversion}"
+module load $ngsUtilsVersion
+module load $ngsversion
 
 module list
 #

diff --git a/test/test_pipeline.sh b/test/test_pipeline.sh
@@ -71,7 +71,7 @@ cd ${workfolder}/generatedscripts/PlatinumSubset/
 sh generate_template.sh 
 
 cd scripts
-perl -pi -e 's|module load \"\${ngsversion}\"|EBROOTNGS_DNA=/groups/umcg-gaf/tmp04/tmp/NGS_DNA/\n#string computeVersion\nmodule load Molgenis-Compute/\${computeVersion}|' *.sh
+perl -pi -e 's|module load \$ngsversion|EBROOTNGS_DNA=/groups/umcg-gaf/tmp04/tmp/NGS_DNA/\n#string computeVersion\nmodule load Molgenis-Compute/\${computeVersion}|' *.sh
 sh submit.sh
 
 cd ${workfolder}/projects/PlatinumSubset/run01/jobs/