fix Windows paths in datasets (#134)

* fix windows paths * fix path --------- Co-authored-by: Martin Schorb <[email protected]>
mobie · Feb 20, 2024 · 2c377f5 · 2c377f5
1 parent cd3789b
commit 2c377f5
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diff --git a/.gitignore b/.gitignore
@@ -6,3 +6,4 @@ tmp*/
 *.h5
 .idea/
 test/test-folder/
+build/
diff --git a/mobie/metadata/source_metadata.py b/mobie/metadata/source_metadata.py
@@ -175,6 +175,11 @@ def _get_image_metadata(dataset_folder, path, type_, file_format, channel):
     else:
         raise ValueError(f"Invalid file format {file_format}")
 
+    # sanitize paths generated in Windows
+    for key in ["relativePath", "s3Address"]:
+        if key in format_.keys():
+            format_[key] = format_[key].replace("\\", "/")
+
     if channel is not None:
         if file_format not in ("ome.zarr", "ome.zarr.s3"):
             raise NotImplementedError
-Original file line number
+Diff line change
@@ Expand Up / @@ -6,3 +6,4 @@ tmp*/ @@
     *.h5
     .idea/
     test/test-folder/
+    build/