Add "datastores" to represent input data from zarr, npy, etc #57
Workflow file for this run
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# cicd workflow for running tests with pytest | |
# needs to first install pdm, then install torch cpu manually and then install the package | |
# then run the tests | |
name: test (pdm install, cpu) | |
on: [push, pull_request] | |
jobs: | |
tests: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
- name: Install pdm | |
run: | | |
python -m pip install pdm | |
- name: Create venv | |
run: | | |
pdm venv create --with-pip | |
pdm use --venv in-project | |
- name: Install torch (CPU) | |
run: | | |
pdm run python -m pip install torch --index-url https://download.pytorch.org/whl/cpu | |
# check that the CPU version is installed | |
- name: Install package (including dev dependencies) | |
run: | | |
pdm install --group :all | |
- name: Print and check torch version | |
run: | | |
pdm run python -c "import torch; print(torch.__version__)" | |
pdm run python -c "import torch; assert torch.__version__.endswith('+cpu')" | |
- name: Load cache data | |
uses: actions/cache/restore@v4 | |
with: | |
path: data | |
key: ${{ runner.os }}-meps-reduced-example-data-v0.1.0 | |
restore-keys: | | |
${{ runner.os }}-meps-reduced-example-data-v0.1.0 | |
- name: Run tests | |
run: | | |
pdm run pytest | |
- name: Save cache data | |
uses: actions/cache/save@v4 | |
with: | |
path: data | |
key: ${{ runner.os }}-meps-reduced-example-data-v0.1.0 |