Code

Organize#4

Code

Merged

taxe10 merged 36 commits intomainmlexchange/mlex_dimension_reduction_umap:mainfrom organizemlexchange/mlex_dimension_reduction_umap:organizeCopy head branch name to clipboardSep 24, 2024

+697-120

Commits

Commits on Mar 19, 2024

• Use yaml to parse parameters

  runboj

  committed
  b87eec9

Commits on Mar 20, 2024

• Add pyyaml

  runboj

  committed
  e477009

Commits on Mar 28, 2024

• Add tiled

  runboj

  committed
  e9ad7e5

• Update image ending

  runboj

  committed
  181e7d5

• Remove input data path'

  runboj

  committed
  b907877

• Use yaml file for UMAP_example

  runboj

  committed
  d87710e

• Read parameters from yaml file

  runboj

  committed
  c17d0e5

• Update ignore files

  runboj

  committed
  ee190f6

Commits on Apr 3, 2024

• Add uid_retrieve

  runboj

  committed
  d7121f9

• Add flake8

  runboj

  committed
  5b0c0ed

• Add pre-commit

  runboj

  committed
  ca9e086

• Update umap to read latent vectors from autoencoder

  runboj

  committed
  0b27191

Commits on Apr 5, 2024

• updating results directories

  taxe10

  committed
  189caf8

• fixed bug when uid_retrieve is an empty string

  taxe10

  committed
  eadf5e3

Commits on Apr 6, 2024

• fixed bug, compute umap mas not calling the stacked images

  taxe10

  committed
  8450885

Commits on May 28, 2024

• Add pyproject.toml

  runboj

  committed
  37d9cdf

• Update python version

  runboj

  committed
  9ad67a3

• Move Dockerfile outside docker folder

  runboj

  committed
  1d10c85

• Add unit test for umap

  runboj

  committed
  2fef752

• Remove docker folder

  runboj

  committed
  1aef0e0

• Update readme for pyproject.toml

  runboj

  committed
  4a1492a

• Update Dockerfile as we delete requirements.txt

  runboj

  committed
  4c3edff

• Remove docker folder in makefile

  runboj

  committed
  9487709

• Add GitHub action to check formatting and unit testing

  runboj

  committed
  94ac5c9

Commits on May 29, 2024

• Move umap run files to src folder such that toml file can run

  runboj

  committed
  81ae6e7

• Use pytest

  runboj

  committed
  eae2c49

Commits on Jun 1, 2024

• Update tiled version

  taxe10

  committed
  5cf443e

• Core organization and writing results back to tiled

  taxe10

  committed
  916b263

Commits on Jun 5, 2024

• Adding pytest to dev

  taxe10

  committed
  d6616c9

• Add tiled to dependencies

  taxe10

  committed
  0ba6ac6

• Update tiled version

  taxe10

  committed
  ecc18a2

• Add load and save model option

  taxe10

  committed
  2677ced

• Fix bug with when data shape has length 2

  taxe10

  committed
  0e09df2

• Fix merge conflicts

  taxe10

  committed
  f73b437

• Update example to reflect schema changes

  taxe10

  committed
  9e12aa1

• Merge pull request #5 from taxe10/main

  Show description for 9a4f474
  taxe10

  authored
  9a4f474