fix: cleaning some error messages

src/mic/_utils.py

@@ -128,8 +128,7 @@ def init_logger():
         logger.removeHandler(i)
 
     logger.addHandler(handler)
-    logger.setLevel(logging.DEBUG)
-
+    logger.setLevel(logging.WARNING)
 
 def get_latest_version():
     try:
@@ -205,10 +204,9 @@ def upload_code(upload_file: Path):
     user = "upload"
     password = "HVmyqAPWDNuk5SmkLOK2"
     header = {'Content-Type': 'application/binary'}
-
     try:
         with open(upload_file, 'rb') as f:
-            r = requests.put(url, headers=header, data=f, verify=False, auth=HTTPBasicAuth(user, password))
+            r = requests.put(url, headers=header, data=f, verify=True, auth=HTTPBasicAuth(user, password))
         r.raise_for_status()
         return r
     except requests.exceptions.Timeout:

src/mic/commands_notebook.py

@@ -170,7 +170,6 @@ def upload_configuration(cwl_document, cwl_values, profile):
     inputs = get_inputs(cwl_document_dict)
     #outputs = get_outputs(cwl_document_dict)
     parameters = get_parameters(cwl_document_dict)
-    print(parameters)
     # write then on MIC file
     add_inputs(mic_config_path, inputs, cwl_values_dict)
     #add_outputs(mic_config_path, outputs, cwl_values)
@@ -182,7 +181,7 @@ def upload_configuration(cwl_document, cwl_values, profile):
     #obtain cwl command
     write_spec(mic_config_path, CWL_KEY, cwl_document_path)
     # Message publish start
-    info_start_publish(True)
+    #info_start_publish(True)
     # push the component
     model_configuration = create_model_catalog_resource_cwl(
         Path(mic_config_path),

src/mic/cwl/cwl.py

@@ -86,8 +86,6 @@ def supported(cwl_spec):
 def add_parameters(config_yaml_path: Path, cwl_spec: Dict, values: Dict):
     spec = yaml.load(config_yaml_path.open(), Loader=yaml.Loader)
     spec[PARAMETERS_KEY] = {}
-    print(cwl_spec)
-    print(values)
     for key, item in cwl_spec.items():
         name = key
         value = values[key]

src/mic/publisher/model_catalog.py

@@ -18,7 +18,6 @@
 from mic.resources.software_version import SoftwareVersionCli
 from modelcatalog import DatasetSpecification, ModelConfiguration, SoftwareImage, Parameter, Model, SoftwareVersion, \
     DataTransformation
-import requests
 
 def generate_uuid():
     return "https://w3id.org/okn/i/mint/{}".format(str(uuid.uuid4()))
@@ -31,8 +30,8 @@ def create_model_catalog_resource_cwl(mint_config_file, name=None, execution_dir
     if code is None:
         click.secho("Failed to upload. Missing information zip file", fg="red")
     else:
-        url = upload_code(Path(code))
-
+        response = upload_code(Path(code))
+        url = response.text
     model_catalog_inputs = create_data_set_resource(allow_local_path, inputs,
                                                     execution_dir) if inputs else None
     model_catalog_outputs = create_data_set_resource(False, outputs,
@@ -93,8 +92,6 @@ def create_parameter_resource(parameters):
     for key, item in parameters.items():
         data_type = "string"
         if "type" in item and item["type"] != '' and item["type"] is not None:
-            print(item)
-            print(item["type"])
             data_type = MAP_PYTHON_MODEL_CATALOG[item["type"]]
         _parameter = Parameter(id=generate_uuid(), label=[key], position=[position], type=[TYPE_PARAMETER], has_data_type=[data_type])
         _parameter.has_default_value = [item["default_value"]]

src/mic/tests/test_utils.py

@@ -0,0 +1,18 @@
+from mic._utils import upload_code, download
+from pathlib import Path
+from filecmp import cmp
+
+RESOURCES = "resources"
+
+def test_upload_code(tmp_path):
+    file_name = "mic_full.yaml"
+    file_test = Path(__file__).parent / RESOURCES / file_name
+    response = upload_code(file_test)
+    assert response.status_code == 200
+    url = response.text
+    response_get = download(url)
+    assert response_get.status_code == 200
+    file_test_downloaded = tmp_path / file_name
+    with open(file_test_downloaded, 'wb') as f:
+        f.write(response_get.content)
+    assert cmp(file_test, file_test_downloaded)