pip installable

MANIFEST.in

@@ -0,0 +1,30 @@
+# Include the README
+include README
+
+# Include the license file
+include LICENCE
+include THIRD.txt
+
+# Include dependencies
+include requirements*.txt
+
+# Include makefile
+include Makefile
+
+# Include docs
+recursive-include docs
+
+# Include Changelog
+include CHANGELOG
+
+# Include tests
+recursive-include tests/testsuites  *
+
+# Include scripts
+recursive-include scripts   *
+
+# Include tuto
+include tutorial/*.ipynb
+
+# Include include files
+include include/*

pyproject.toml

@@ -0,0 +1,25 @@
+
+[build-system]
+requires = ["setuptools", "wheel", "Cython",  "numpy"]
+build-backend = 'setuptools.build_meta'
+
+[tool.poetry]
+name = "bbhx"
+version = "1.0.7"
+description = "A package for LISA Data Analysis"
+license = "GPL"
+classifiers = ["Programming Language :: Python :: 3", "Operating System :: OS Independent"]
+homepage = "https://github.com/mikekatz04/LISAanalysistools"
+authors = ["Michael L. Katz"]
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = "*"
+# astropy = "==5.2.1"
+# corner = "==2.2.1"
+# healpy = "==1.16.2"
+# "ligo.skymap" = "==1.0.4"
+# matplotlib = "==3.6.3"
+# pandas = "==1.5.2"
+# seaborn = "==0.12.2"
+# tables = "==3.8.0"

scripts/prebuild.py

@@ -0,0 +1,94 @@
+import shutil
+import requests
+
+
+fps_cu_to_cpp = [
+    "PhenomHM",
+    "Response",
+    "Interpolate",
+    "WaveformBuild",
+    "Likelihood",
+]
+fps_pyx = ["phenomhm", "response", "interpolate", "waveformbuild", "likelihood"]
+
+for fp in fps_cu_to_cpp:
+    shutil.copy("src/" + fp + ".cu", "src/" + fp + ".cpp")
+
+for fp in fps_pyx:
+    shutil.copy("src/" + fp + ".pyx", "src/" + fp + "_cpu.pyx")
+
+
+# setup version file
+with open("README.md", "r") as fh:
+    lines = fh.readlines()
+
+for line in lines:
+    if line.startswith("Current Version"):
+        version_string = line.split("Current Version: ")[1].split("\n")[0]
+
+with open("bbhx/_version.py", "w") as f:
+    f.write("__version__ = '{}'".format(version_string))
+
+
+initial_text_for_constants_file = """
+# Collection of citations for modules in bbhx package
+
+# Copyright (C) 2020 Michael L. Katz
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+
+"""
+
+initial_text_for_constants_file2 = """
+
+Constants
+*******************************
+
+The module :code:`bbhx.utils.constants` houses the constants used throughout the package.
+
+Constants list:
+
+"""
+
+fp_out_name = "bbhx/utils/constants.py"
+fp_out_name2 = "docs/source/user/constants.rst"
+fp_in_name = "include/constants.h"
+
+# develop few.utils.constants.py
+with open(fp_out_name, "w") as fp_out:
+    with open(fp_out_name2, "w") as fp_out2:
+        fp_out.write(initial_text_for_constants_file)
+        fp_out2.write(initial_text_for_constants_file2)
+        with open(fp_in_name, "r") as fp_in:
+            lines = fp_in.readlines()
+            for line in lines:
+                if len(line.split()) == 3:
+                    if line.split()[0] == "#define":
+                        try:
+                            _ = float(line.split()[2])
+                            string_out = (
+                                line.split()[1] + " = " + line.split()[2] + "\n"
+                            )
+                            fp_out.write(string_out)
+                            fp_out2.write(f"\t* {string_out}")
+
+                        except ValueError as e:
+                            continue
+
+# for fp in fps_cu_to_cpp:
+#     os.remove("src/" + fp + ".cpp")
+
+# for fp in fps_pyx:
+#     os.remove("src/" + fp + "_cpu.pyx")

setup.py

@@ -272,20 +272,6 @@ def build_extensions(self):
     )
 
     # gpu_extensions.append(Extension(extension_name, **temp_dict))
-fps_cu_to_cpp = [
-    "PhenomHM",
-    "Response",
-    "Interpolate",
-    "WaveformBuild",
-    "Likelihood",
-]
-fps_pyx = ["phenomhm", "response", "interpolate", "waveformbuild", "likelihood"]
-
-for fp in fps_cu_to_cpp:
-    shutil.copy("src/" + fp + ".cu", "src/" + fp + ".cpp")
-
-for fp in fps_pyx:
-    shutil.copy("src/" + fp + ".pyx", "src/" + fp + "_cpu.pyx")
 
 cpu_extension = dict(
     libraries=["gsl", "gslcblas", "gomp", "lapack"],
@@ -329,63 +315,6 @@ def build_extensions(self):
     **cpu_extension,
 )
 
-initial_text_for_constants_file = """
-# Collection of citations for modules in bbhx package
-
-# Copyright (C) 2020 Michael L. Katz
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-
-"""
-
-initial_text_for_constants_file2 = """
-
-Constants
-*******************************
-
-The module :code:`bbhx.utils.constants` houses the constants used throughout the package.
-
-Constants list:
-
-"""
-
-fp_out_name = "bbhx/utils/constants.py"
-fp_out_name2 = "docs/source/user/constants.rst"
-fp_in_name = "include/constants.h"
-
-# develop few.utils.constants.py
-with open(fp_out_name, "w") as fp_out:
-    with open(fp_out_name2, "w") as fp_out2:
-        fp_out.write(initial_text_for_constants_file)
-        fp_out2.write(initial_text_for_constants_file2)
-        with open(fp_in_name, "r") as fp_in:
-            lines = fp_in.readlines()
-            for line in lines:
-                if len(line.split()) == 3:
-                    if line.split()[0] == "#define":
-                        try:
-                            _ = float(line.split()[2])
-                            string_out = (
-                                line.split()[1] + " = " + line.split()[2] + "\n"
-                            )
-                            fp_out.write(string_out)
-                            fp_out2.write(f"\t* {string_out}")
-
-                        except ValueError as e:
-                            continue
-
 
 extensions = [
     pyPhenomHM_cpu_ext,
@@ -404,17 +333,6 @@ def build_extensions(self):
         pyLikelihood_ext,
     ] + extensions
 
-# setup version file
-with open("README.md", "r") as fh:
-    lines = fh.readlines()
-
-for line in lines:
-    if line.startswith("Current Version"):
-        version_string = line.split("Current Version: ")[1].split("\n")[0]
-
-with open("bbhx/_version.py", "w") as f:
-    f.write("__version__ = '{}'".format(version_string))
-
 setup(
     name="bbhx",
     author="Michael Katz",
@@ -425,12 +343,6 @@ def build_extensions(self):
     cmdclass={"build_ext": custom_build_ext},
     # Since the package has c code, the egg cannot be zipped
     zip_safe=False,
-    version=version_string,
+    version="1.0.7",
     python_requires=">=3.6",
 )
-
-for fp in fps_cu_to_cpp:
-    os.remove("src/" + fp + ".cpp")
-
-for fp in fps_pyx:
-    os.remove("src/" + fp + "_cpu.pyx")