MultiMAP

MultiMAP is a method for integrating single cell multi-omics. MultiMAP can also be used for batch correction. More detail is available in our preprint.

Installation

We're working on getting the package on pip ASAP. Meanwhile enjoy this placeholder solution!

git clone https://github.com/Teichlab/MultiMAP.git
cd MultiMAP
pip3 install .

Usage and Documentation

A tutorial covering both RNA-ATAC integration and RNA-Seq batch correction use can be found here.

Documentation of the function parameters can be found on ReadTheDocs.

Citation

If your work uses MultiMAP, please cite the paper:

@article{sarkinjain2021multimap,
  title={MultiMAP: Dimensionality Reduction and Integration of Multimodal Data},
  author={Sarkin Jain, Mika and Dominguez Conde, Cecilia and Polanski, Krzysztof and Chen, Xi and Park, Jongeun and Botting, Rachel 
  and Stephenson, Emily  and Haniffa, Muzlifah and Lamacraft, Austen and Efremova, Mirjana and Teichmann, Sarah},
  doi={https://doi.org/10.1101/2021.02.16.431421},
  journal={BioRxiv},
  year={2021}
}

Contact

Mika Sarkin Jain - [email protected]
Mirjana Efremova - [email protected]
Sarah Teichmann - [email protected]