outstanding issues from the documentation, removed from public facing doc for 2025 renewal

[sierra-moxon]

• may need to reassert identifier, range and or unique for subclasses
• still getting anyurl typed string statement objects in RDF. I added a workaround in anyuri-strings-to-iris
• make better use of id prefixes?
• todo what reference ontologies do we want to include in a graph database?
  • kegg, but from where?
  • nmdc schema
  • envo
  • mixs
  • chebi
• selected branches of NCBI taxonomy? protein ontology?
• could federate uniprot
• gen-prefix-map
  • doesn't merge
  • emits JSON content into a file with the .yaml extension by default
  • doesn't look like all the emit_prefixes are making it into the OWL output
• two graphdb endpoints: http://3.236.215.220:7200/sparql (switch to port 80) and https://graphdb-dev.microbiomedata.org/
• configure graphdb visual graph for showing blank nodes ?
• MAM audit DOIs, websites, urls, and other uriorcurie values

[turbomam]

Thanks. Can you help me find corresponding GH diff, in which those lines were removed? I'd like to take a screen shot of it so I can see the indentation.