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HISTORY
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TAG: seqfetch-6-0-24-1
DATE: 11/21/2024
STAFF: lec
CHANGES:
wts2-1487/e4g-81/Install: fixes for MGI_Install
TAG: seqfetch-6-0-13-?
DATE: 05/14/2018
STAFF: lec
CHANGES: TR12734/GenFeVah/remove VEGA
TAG: seqfetch-6-0-6-1
DATE: 10/12/2016
STAFF: dbm
CHANGES:
1) Conversion from cvs to git
TAG: seqfetch-6-0-2-1
TAG: seqfetch-tr12070-1
DATE: 12/02/2015
STAFF: lec
CHANGES:
1) TR12070/12038/dots/dfci/nia
TAG: seqfetch-tr12070-BP
DATE: 09/25/2015
STAFF: lec
CHANGES:
1) branch point tag for TR12070/12038/dots/dfci/nia
TAG: seqfetch-5-1-1-4
TAG: seqfetch-5-1-1-3
DATE: 11/10/2014
STAFF: lnh
CHANGES: TR11627 - Move Emboss to MGI server
1) changed EMBOSS_HOST from: hygelac to: bhmgiem01
TAG: seqfetch-5-1-1-2
TAG: seqfetch-5-1-1-1
DATE: 01/10/2012
STAFF: sc
CHANGES: updated EmbossClient.py:
1) changed databases Sequence DB from: gbAll to: genbank, tpa
2) changed databases Refseq from: refseqAll to : refseqProt, refseqRna
TAG: seqfetch-4-3-3-1
DATE: 03/15/10
STAFF: marka
CHANGES: merging tr9782 to trunk
TAG: seqfetch-tr9782-BP
DATE: 12/21/09
STAFF: marka
CHANGES: creating branch got tr9782 maintenance release
TAG: seqfetch-4-0-0-x (2)
DATE: 1/8/08
STAFF: pf
RELEASE: 4.0 alpha and beta build tags
TAG: seqfetch-4-0-0-1
DATE: 12/24/07
STAFF: pf
CHANGES: merging tr8087 branch to trunk
TAG: seqfetch-tr8087-x (BP,1)
DATE: 8/30/07 -> 9/15/07
STAFF: pf
CHANGES: MGI 4.0 branch and branch point tags
TAG: seqfetch-3-5-2-0
DATE: 2/27/07
STAFF: pf
CHANGES: 3.52 tr7683 brance merged to trunk
TAG: seqfetch-tr7683-1
DATE: 1/15/07
STAFF: pf
CHANGES: 3.52 modifications; tigr-dfci transition
TAG: seqfetch-tr7683-BP
DATE: 1/10/2007
STAFF: pf
CHANGES: BP for 3.52 release
TAG: seqfetch-3-5-1-1
DATE: 9/13/2006
STAFF: pf
CHANGES: merging tr7740 branch to the trunk
TAG: seqfetch-TR7740-BP
DATE: 8/05/2006
STAFF: pf
CHANGES: build36
TAG: seqfetch-3-5-0-1
DATE: 3/05/2006
STAFF: pf
CHANGES: 3.5 release
TAG: seqfetch-tr7379-BP
DATE: 1/19/2006
STAFF: pf
CHANGES: branch point for tr7379 maint release
TAG: seqfetch-3-4-2-1
DATE: 1/11/2006
STAFF: pf
CHANGES: merge minor changes back to the trunk
TAG: seqfetch-tr7193-BP
DATE: 12/28/2005
STAFF: pf
CHANGES: seqfetch pre-tr7193 brach point tag
TAG: seqfetch-1-0-12
DATE: 12/14/2004
STAFF: pf
RELEASE: beta
CHANGES:
1) added new flanking options for calling tofasta CGI script
TAG: seqfetch-1-0-10
DATE: 12/08/2004
STAFF: pf
RELEASE: beta
CHANGES:
1) second round of fixes for MGI 3.1
TAG: seqfetch-1-0-7
DATE: 05/11/2004
STAFF: blk
RELEASE: Alpha
CHANGES:
1) minor bugfix where the last nucleotide was lost
2) improved error message when no sequences submitted
TAG: seqfetch-1-0-6
DATE: 05/03/2004
STAFF: jsb
RELEASE: Alpha
CHANGES:
1) minor bugfix (specified by Ben) where the last nucleotide was lost
TAG: seqfetch-1-0-5
DATE: 04/05/2004
STAFF: blk
RELEASE: Alpha
CHANGES:
1) Fixed bugs in lib/python/tofasta.py and lib/python/gcglib.py .
2) Enhanced lib/python/tofasta.py and lib/python/gcglib.py to support
NIA Mouse Gene Index (niamgi) and DoTS sequences (dotsm).
3) Enhanced lib/python/tofasta.py and lib/python/gcglib.py to provide
user-friendly error messages.
TAG: seqfetch-1-0-4
DATE: 03/02/2004
STAFF: blk
RELEASE: Alpha
CHANGES:
1) Added lib/python/CGInocontenttype.py which is identical to CGI.py
from /usr/local/mgi/lib/python, but does not print out any HTML
Content-Type. CGI.py always prints out 'Content-Type: text/html'
and seqfetch needs to have the Content-Type set to text/plain.
2) Changed lib/python/tofasta.py to use CGInocontenttype.py.
3) Changed www/tofasta.cgi to print out 'Content-Type: tex/plain\n'.
TAG: seqfetch-1-0-3
DATE: 02/04/2004
STAFF: blk
RELEASE: Alpha
CHANGES:
1) Added lib/python/Profiler.py to track elapsed time between steps in
application.
2) Added functionality to print out elapsed time between steps in program
when debug parameter set when calling tofasta.cgi. The functionality
was added to lib/python/tofasta.py and lib/python/gcglib.py .
3) Made entire tool run about 10 seconds faster by changing how files are
transferred from the remote GCG server in lib/python/gcglib.py. The
old getToFASTAOutput and getGCGOutput functions would using UNIX cat
to get the contents of the files and then remove any files from the
remote GCG server (getToFASTAOutput removed two files, getGCGOutput
removed one file). Each of these UNIX commands (either two or three of
them) were executed as separate rsh commands that required separate
logins to the remote GCG server. Given that the GCG environment must
initialize at each login, this design was very inefficient. The new
getGCGOutput function replaces the old getToFASTAOutput and getGCGOutput
functions and uses FTP to retrieve the contents of the files. The
only functionality the new getGCGOutput function does not do is to
remove the files from the remote GCG server. We decided to do this
by some cron process independent of this application.
4) Added the function printString to lib/python/gcglib.py to be used as
a callback function when using ftplib in the getGCGOutput function.
This also required the introduction of the global variable, contents.
TAG: seqfetch-1-0-2
DATE: 01/21/2004
STAFF: blk
RELEASE: Alpha
CHANGES:
1) Corrected default username and password for remote GCG server and
path for *.nib files in Configuration.defaults.
TAG: seqfetch-1-0-1
DATE: 01/21/2004
STAFF: blk
RELEASE: Alpha
CHANGES:
1) Added README.Install file.
TAG: seqfetch-1-0-0
DATE: 01/20/2004
STAFF: blk
RELEASE: Alpha
CHANGES:
1) Initial version.