Merge pull request #276 from mgalardini/new_version

New version (1.3.12)
mgalardini · Aug 21, 2024 · 87d20c0 · 87d20c0
2 parents 45b27a6 + ce19fc8
commit 87d20c0
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,4 +1,13 @@
 # CHANGELOG
+v1.3.12 (August 2024)
+- Improvement: `annotate_hits.py` has a new argument to specify more GFF types to use
+- Improvement: `count_patterns.py` has a new argument to only print the p-value threshold (thanks to Bamu Damaris)
+- Bugfix: refuse to run if certain arguments are not provided
+- Docs: fix readthedocs' configuration
+- CI: speeding things up using mamba
+- CI: workaround to avoid GH actions crashing due to glmnet_py
+- Tests: avoid failures due to newer versions of sklearn
+
 v1.3.11 (May 2023)
 - Improvement: Rtab files can use a empty string to signify missing values
 - Bugfix: avoid crashes wn running wgGWAS with covariates

diff --git a/docs/conf.py b/docs/conf.py
@@ -76,9 +76,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '1.3.10'
+version = '1.3.12'
 # The full version, including alpha/beta/rc tags.
-release = '1.3.10'
+release = '1.3.12'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/pyseer/__init__.py b/pyseer/__init__.py
@@ -2,4 +2,4 @@
 
 '''Python reimplementation of SEER for bacterial GWAS'''
 
-__version__ = '1.3.12-dev'
+__version__ = '1.3.12'
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		'''Python reimplementation of SEER for bacterial GWAS'''

		__version__ = '1.3.12-dev'
		__version__ = '1.3.12'