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Fixed soa:Geo class representation #80

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May 27, 2024
Merged

Fixed soa:Geo class representation #80

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ca9d294
Fixed soa:Geo class representation
linnaung Jan 5, 2024
e85d57f
Restore dbprop city and country
linnaung May 24, 2024
64fd1df
review address
linnaung May 27, 2024
7e308f1
review address
linnaung May 27, 2024
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21 changes: 8 additions & 13 deletions ontologies/semopenalex-ontology-shacl.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
<https://orcid.org/0009-0009-4338-0983>;
dct:issued "2022-05-12"^^xsd:date;
dct:license <http://creativecommons.org/publicdomain/zero/1.0/>;
dct:modified "2023-10-24"^^xsd:date;
dct:modified "2024-05-24"^^xsd:date;
dct:publisher <http://dbpedia.org/resource/Karlsruhe_Institute_of_Technology>, <http://www.wikidata.org/entity/Q22132500>;
dct:title "SemOpenAlex Ontology"@en;
rdfs:comment "The Semantic OpenAlex Ontology, described using W3C RDF Schema and the Web Ontology Language OWL."@en;
Expand Down Expand Up @@ -45,7 +45,7 @@
rdfs:label "Linn Aung";
foaf:mbox <mailto:[email protected]> .

<http://dbpedia.org/ontology/location> a owl:ObjectProperty;
<https://dbpedia.org/ontology/location> a owl:ObjectProperty;
rdfs:isDefinedBy <https://semopenalex.org/ontology/> .

<http://prismstandard.org/namespaces/basic/2.0/doi> a owl:DatatypeProperty;
Expand Down Expand Up @@ -191,7 +191,7 @@ soa:013f2f63f0b01681bb2b6bee1410bea9 a sh:PropertyShape;

soa:031c9716dcc41536893fe766a943dca2 a sh:PropertyShape;
sh:datatype xsd:string;
sh:path <http://www.geonames.org/ontology#countryCode> .
sh:path <https://dbpedia.org/property/countryCode> .

soa:0505f27824e6216f6cefdbd4e005817d a sh:PropertyShape .

Expand Down Expand Up @@ -225,7 +225,7 @@ soa:0d30180e88607a9b9f3e7efdf6a5a920 a sh:PropertyShape;

soa:1332c0bb9ba85ee3d259b28b69384e8d a sh:PropertyShape;
sh:datatype xsd:float;
sh:path <http://www.geonames.org/ontology#lat> .
sh:path <http://www.w3.org/2003/01/geo/wgs84_pos#lat> .

soa:189d841b1771b070e525aa80a66987e5 a sh:PropertyShape;
sh:class soa:Source;
Expand All @@ -237,7 +237,7 @@ soa:1bb749c62c841583be769092b22db6b8 a sh:PropertyShape;

soa:1c15feb6789e3ab6b591b6963f5fabd8 a sh:PropertyShape;
sh:datatype xsd:float;
sh:path <http://www.geonames.org/ontology#long> .
sh:path <http://www.w3.org/2003/01/geo/wgs84_pos#long> .

soa:2183731b5316d244e42f7f4bb5d53178 a sh:PropertyShape .

Expand Down Expand Up @@ -518,9 +518,8 @@ soa:Geo a owl:Class;
rdfs:label "Geo"@en .

soa:GeoShape a sh:NodeShape;
sh:property soa:031c9716dcc41536893fe766a943dca2, soa:1332c0bb9ba85ee3d259b28b69384e8d,
soa:1c15feb6789e3ab6b591b6963f5fabd8, soa:2b3c29e0b34e9bc29556f5229eb14a97, soa:6ea4e05d3608eb027517e565a2f1103c,
soa:e38f3b3c38e508f7aa6cceb7394b6c8b, soa:eb7e6709e5e9634bfcc6232b56028bce;
sh:property soa:031c9716dcc41536893fe766a943dca2, soa:1332c0bb9ba85ee3d259b28b69384e8d, soa:2b3c29e0b34e9bc29556f5229eb14a97,
soa:1c15feb6789e3ab6b591b6963f5fabd8, soa:eb7e6709e5e9634bfcc6232b56028bce, soa:6ea4e05d3608eb027517e565a2f1103c ;
sh:targetClass soa:Geo .

soa:HostVenueShape a sh:NodeShape;
Expand Down Expand Up @@ -842,13 +841,9 @@ soa:ddcebb3ed512f8f49c20e7d8d168d087 a sh:PropertyShape;
sh:datatype xsd:string;
sh:path soa:umlsAui .

soa:e38f3b3c38e508f7aa6cceb7394b6c8b a sh:PropertyShape;
sh:datatype xsd:string;
sh:path <http://www.geonames.org/ontology#geonamesID> .

soa:e6d6f1fbf0cd5a66ac9208072882dea6 a sh:PropertyShape;
sh:class soa:Geo;
sh:path <http://dbpedia.org/ontology/location> .
sh:path <https://dbpedia.org/ontology/location> .

soa:e87cdd7b584967125d063d517eed6e4e a sh:PropertyShape;
sh:class soa:Author;
Expand Down
16 changes: 5 additions & 11 deletions ontologies/semopenalex-ontology.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
rdfs:label "SemOpenAlex Ontology"@en;
rdfs:comment "The Semantic OpenAlex Ontology, described using W3C RDF Schema and the Web Ontology Language OWL."@en ;
dcterms:created "2022-05-12"^^xsd:date ;
dcterms:modified "2023-10-24"^^xsd:date ;
dcterms:modified "2024-05-24"^^xsd:date ;
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
dcterms:issued "2023-10-18"^^xsd:date ;
dcterms:publisher <http://dbpedia.org/resource/Karlsruhe_Institute_of_Technology> ;
Expand Down Expand Up @@ -262,7 +262,7 @@ foaf:name a owl:DatatypeProperty;
rdfs:label "OpenAccess"@en ;
rdfs:comment "This class represents an open access status."@en.

<http://dbpedia.org/ontology/location> a owl:ObjectProperty;
<https://dbpedia.org/ontology/location> a owl:ObjectProperty;
rdfs:domain <https://semopenalex.org/ontology/Institution>;
rdfs:range <https://semopenalex.org/ontology/Geo> ;
rdfs:comment "This property specifies the location of an institution."@en;
Expand Down Expand Up @@ -606,31 +606,25 @@ foaf:name a owl:DatatypeProperty;
rdfs:comment "This property specifies the city of a geo."@en;
rdfs:label "city"@en .

<http://www.geonames.org/ontology#geonamesID> a owl:DatatypeProperty;
rdfs:domain <https://semopenalex.org/ontology/Geo>;
rdfs:range xsd:string ;
rdfs:comment "This property specifies the geonames ID of a geo."@en;
rdfs:label "geonames ID"@en .

<https://dbpedia.org/property/region> a owl:DatatypeProperty;
rdfs:domain <https://semopenalex.org/ontology/Geo>;
rdfs:range xsd:string ;
rdfs:comment "This property specifies the region of a geo."@en;
rdfs:label "region"@en .

<http://www.geonames.org/ontology#countryCode> a owl:DatatypeProperty;
<https://dbpedia.org/property/countryCode> a owl:DatatypeProperty;
rdfs:domain <https://semopenalex.org/ontology/Geo>;
rdfs:range xsd:string ;
rdfs:comment "This property specifies the country code of a geo."@en;
rdfs:label "country code"@en .

<http://www.geonames.org/ontology#lat> a owl:DatatypeProperty;
<http://www.w3.org/2003/01/geo/wgs84_pos#lat> a owl:DatatypeProperty;
rdfs:domain <https://semopenalex.org/ontology/Geo>;
rdfs:range xsd:float ;
rdfs:comment "This property specifies the latitude of a geo."@en;
rdfs:label "latitude"@en .

<http://www.geonames.org/ontology#long> a owl:DatatypeProperty;
<http://www.w3.org/2003/01/geo/wgs84_pos#long> a owl:DatatypeProperty;
rdfs:domain <https://semopenalex.org/ontology/Geo>;
rdfs:range xsd:float ;
rdfs:comment "This property specifies the longitude of a geo."@en;
Expand Down
3 changes: 3 additions & 0 deletions semopenalex-app/config/namespaces.prop
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Expand Up @@ -3,3 +3,6 @@ dct = http://purl.org/dc/terms/
foaf = http://xmlns.com/foaf/0.1/
fabio = http://purl.org/spar/fabio/
soa = https://semopenalex.org/ontology/
wgs = http://www.w3.org/2003/01/geo/wgs84_pos#
dbpedia-owl = https://dbpedia.org/ontology/
dbprop = https://dbpedia.org/property/
23 changes: 11 additions & 12 deletions transformation-scripts/semopenalex-institutions.py
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Expand Up @@ -158,9 +158,9 @@ def clean_url(nameStr):
city_predicate = URIRef("https://dbpedia.org/property/city")
region_predicate = URIRef("https://dbpedia.org/property/region")
country_predicate = URIRef("https://dbpedia.org/property/country")
country_code_geo_predicate = URIRef("http://www.geonames.org/ontology#countryCode")
lat_geo_predicate = URIRef("http://www.geonames.org/ontology#lat")
long_geo_predicate = URIRef("http://www.geonames.org/ontology#long")
country_code_geo_predicate = URIRef("https://dbpedia.org/property/countryCode")
lat_geo_predicate = URIRef("http://www.w3.org/2003/01/geo/wgs84_pos#lat")
long_geo_predicate = URIRef("http://www.w3.org/2003/01/geo/wgs84_pos#long")
associated_institution_predicate = URIRef("https://semopenalex.org/ontology/hasAssociatedInstitution")
year_predicate = URIRef("https://semopenalex.org/ontology/year")

Expand Down Expand Up @@ -302,22 +302,18 @@ def clean_url(nameStr):
if not geo_city is None:
institutions_graph.add((geo_uri,city_predicate,Literal(geo_city,datatype=XSD.string)))

geo_country_code = institution_geo['country_code']
if not geo_country_code is None:
institutions_graph.add((geo_uri,country_code_geo_predicate,Literal(geo_country_code,datatype=XSD.string)))

geo_geonames_city_id = institution_geo['geonames_city_id']
if not geo_geonames_city_id is None:
institutions_graph.add((geo_uri,geoname_id_predicate,Literal(geo_geonames_city_id,datatype=XSD.string)))
institutions_graph.add((geo_uri, OWL.sameAs, URIRef('https://sws.geonames.org/' + geo_geonames_city_id)))

geo_region = institution_geo['region']
if not geo_region is None:
institutions_graph.add((geo_uri,region_predicate,Literal(geo_region,datatype=XSD.string)))

geo_country_code = institution_geo['country_code']
if not geo_country_code is None:
institutions_graph.add((geo_uri,country_code_geo_predicate,Literal(geo_country_code,datatype=XSD.string)))

geo_country = institution_geo['country']
if not geo_country is None:
institutions_graph.add((geo_uri,country_predicate,Literal(geo_country,datatype=XSD.string)))

geo_latitude = institution_geo['latitude']
if not geo_latitude is None:
institutions_graph.add((geo_uri,lat_geo_predicate,Literal(geo_latitude,datatype=XSD.float)))
Expand All @@ -326,6 +322,9 @@ def clean_url(nameStr):
if not geo_longitude == None:
institutions_graph.add((geo_uri,long_geo_predicate,Literal(geo_longitude,datatype=XSD.float)))

geo_country = institution_geo['country']
if not geo_country is None:
institutions_graph.add((geo_uri,country_predicate,Literal(geo_country,datatype=XSD.string)))

#international
#to do
Expand Down