Fixed soa:Geo class representation (#80)

* Fixed soa:Geo class representation - updated properties for soa:Geo class - fixed mapping script for soa:Geo class * Restore dbprop city and country * review address * review address
metaphacts · May 27, 2024 · 087431b · 087431b
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diff --git a/ontologies/semopenalex-ontology-shacl.ttl b/ontologies/semopenalex-ontology-shacl.ttl
@@ -17,7 +17,7 @@
     <https://orcid.org/0009-0009-4338-0983>;
   dct:issued "2022-05-12"^^xsd:date;
   dct:license <http://creativecommons.org/publicdomain/zero/1.0/>;
-  dct:modified "2023-10-24"^^xsd:date;
+  dct:modified "2024-05-24"^^xsd:date;
   dct:publisher <http://dbpedia.org/resource/Karlsruhe_Institute_of_Technology>, <http://www.wikidata.org/entity/Q22132500>;
   dct:title "SemOpenAlex Ontology"@en;
   rdfs:comment "The Semantic OpenAlex Ontology, described using W3C RDF Schema and the Web Ontology Language OWL."@en;
@@ -45,7 +45,7 @@
   rdfs:label "Linn Aung";
   foaf:mbox <mailto:[email protected]> .
 
-<http://dbpedia.org/ontology/location> a owl:ObjectProperty;
+<https://dbpedia.org/ontology/location> a owl:ObjectProperty;
   rdfs:isDefinedBy <https://semopenalex.org/ontology/> .
 
 <http://prismstandard.org/namespaces/basic/2.0/doi> a owl:DatatypeProperty;
@@ -191,7 +191,7 @@ soa:013f2f63f0b01681bb2b6bee1410bea9 a sh:PropertyShape;
 
 soa:031c9716dcc41536893fe766a943dca2 a sh:PropertyShape;
   sh:datatype xsd:string;
-  sh:path <http://www.geonames.org/ontology#countryCode> .
+  sh:path <https://dbpedia.org/property/countryCode> .
 
 soa:0505f27824e6216f6cefdbd4e005817d a sh:PropertyShape .
 
@@ -225,7 +225,7 @@ soa:0d30180e88607a9b9f3e7efdf6a5a920 a sh:PropertyShape;
 
 soa:1332c0bb9ba85ee3d259b28b69384e8d a sh:PropertyShape;
   sh:datatype xsd:float;
-  sh:path <http://www.geonames.org/ontology#lat> .
+  sh:path <http://www.w3.org/2003/01/geo/wgs84_pos#lat> .
 
 soa:189d841b1771b070e525aa80a66987e5 a sh:PropertyShape;
   sh:class soa:Source;
@@ -237,7 +237,7 @@ soa:1bb749c62c841583be769092b22db6b8 a sh:PropertyShape;
 
 soa:1c15feb6789e3ab6b591b6963f5fabd8 a sh:PropertyShape;
   sh:datatype xsd:float;
-  sh:path <http://www.geonames.org/ontology#long> .
+  sh:path <http://www.w3.org/2003/01/geo/wgs84_pos#long> .
 
 soa:2183731b5316d244e42f7f4bb5d53178 a sh:PropertyShape .
 
@@ -518,9 +518,8 @@ soa:Geo a owl:Class;
   rdfs:label "Geo"@en .
 
 soa:GeoShape a sh:NodeShape;
-  sh:property soa:031c9716dcc41536893fe766a943dca2, soa:1332c0bb9ba85ee3d259b28b69384e8d,
-    soa:1c15feb6789e3ab6b591b6963f5fabd8, soa:2b3c29e0b34e9bc29556f5229eb14a97, soa:6ea4e05d3608eb027517e565a2f1103c,
-    soa:e38f3b3c38e508f7aa6cceb7394b6c8b, soa:eb7e6709e5e9634bfcc6232b56028bce;
+  sh:property soa:031c9716dcc41536893fe766a943dca2, soa:1332c0bb9ba85ee3d259b28b69384e8d, soa:2b3c29e0b34e9bc29556f5229eb14a97, 
+    soa:1c15feb6789e3ab6b591b6963f5fabd8, soa:eb7e6709e5e9634bfcc6232b56028bce, soa:6ea4e05d3608eb027517e565a2f1103c ;
   sh:targetClass soa:Geo .
 
 soa:HostVenueShape a sh:NodeShape;
@@ -842,13 +841,9 @@ soa:ddcebb3ed512f8f49c20e7d8d168d087 a sh:PropertyShape;
   sh:datatype xsd:string;
   sh:path soa:umlsAui .
 
-soa:e38f3b3c38e508f7aa6cceb7394b6c8b a sh:PropertyShape;
-  sh:datatype xsd:string;
-  sh:path <http://www.geonames.org/ontology#geonamesID> .
-
 soa:e6d6f1fbf0cd5a66ac9208072882dea6 a sh:PropertyShape;
   sh:class soa:Geo;
-  sh:path <http://dbpedia.org/ontology/location> .
+  sh:path <https://dbpedia.org/ontology/location> .
 
 soa:e87cdd7b584967125d063d517eed6e4e a sh:PropertyShape;
   sh:class soa:Author;

diff --git a/ontologies/semopenalex-ontology.ttl b/ontologies/semopenalex-ontology.ttl
@@ -12,7 +12,7 @@
   rdfs:label "SemOpenAlex Ontology"@en;
   rdfs:comment "The Semantic OpenAlex Ontology, described using W3C RDF Schema and the Web Ontology Language OWL."@en ;
   dcterms:created "2022-05-12"^^xsd:date ;
-  dcterms:modified "2023-10-24"^^xsd:date ;
+  dcterms:modified "2024-05-24"^^xsd:date ;
   dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
   dcterms:issued "2023-10-18"^^xsd:date ;
   dcterms:publisher <http://dbpedia.org/resource/Karlsruhe_Institute_of_Technology> ;
@@ -262,7 +262,7 @@ foaf:name a owl:DatatypeProperty;
   rdfs:label "OpenAccess"@en ;
   rdfs:comment "This class represents an open access status."@en.
 
-<http://dbpedia.org/ontology/location> a owl:ObjectProperty;
+<https://dbpedia.org/ontology/location> a owl:ObjectProperty;
   rdfs:domain <https://semopenalex.org/ontology/Institution>;
   rdfs:range <https://semopenalex.org/ontology/Geo> ;
   rdfs:comment "This property specifies the location of an institution."@en;
@@ -606,31 +606,25 @@ foaf:name a owl:DatatypeProperty;
   rdfs:comment "This property specifies the city of a geo."@en;
   rdfs:label "city"@en .
 
-<http://www.geonames.org/ontology#geonamesID> a owl:DatatypeProperty;
-  rdfs:domain <https://semopenalex.org/ontology/Geo>;
-  rdfs:range xsd:string ;
-  rdfs:comment "This property specifies the geonames ID of a geo."@en;
-  rdfs:label "geonames ID"@en .
-
 <https://dbpedia.org/property/region> a owl:DatatypeProperty;
   rdfs:domain <https://semopenalex.org/ontology/Geo>;
   rdfs:range xsd:string ;
   rdfs:comment "This property specifies the region of a geo."@en;
   rdfs:label "region"@en .
 
-<http://www.geonames.org/ontology#countryCode> a owl:DatatypeProperty;
+<https://dbpedia.org/property/countryCode> a owl:DatatypeProperty;
   rdfs:domain <https://semopenalex.org/ontology/Geo>;
   rdfs:range xsd:string ;
   rdfs:comment "This property specifies the country code of a geo."@en;
   rdfs:label "country code"@en .
 
-<http://www.geonames.org/ontology#lat> a owl:DatatypeProperty;
+<http://www.w3.org/2003/01/geo/wgs84_pos#lat> a owl:DatatypeProperty;
   rdfs:domain <https://semopenalex.org/ontology/Geo>;
   rdfs:range xsd:float ;
   rdfs:comment "This property specifies the latitude of a geo."@en;
   rdfs:label "latitude"@en .
 
-<http://www.geonames.org/ontology#long> a owl:DatatypeProperty;
+<http://www.w3.org/2003/01/geo/wgs84_pos#long> a owl:DatatypeProperty;
   rdfs:domain <https://semopenalex.org/ontology/Geo>;
   rdfs:range xsd:float ;
   rdfs:comment "This property specifies the longitude of a geo."@en;

diff --git a/semopenalex-app/config/namespaces.prop b/semopenalex-app/config/namespaces.prop
@@ -3,3 +3,6 @@ dct = http://purl.org/dc/terms/
 foaf = http://xmlns.com/foaf/0.1/
 fabio = http://purl.org/spar/fabio/
 soa = https://semopenalex.org/ontology/
+wgs = http://www.w3.org/2003/01/geo/wgs84_pos#
+dbpedia-owl = https://dbpedia.org/ontology/
+dbprop = https://dbpedia.org/property/
diff --git a/transformation-scripts/semopenalex-institutions.py b/transformation-scripts/semopenalex-institutions.py
@@ -158,9 +158,9 @@ def clean_url(nameStr):
 city_predicate = URIRef("https://dbpedia.org/property/city")
 region_predicate = URIRef("https://dbpedia.org/property/region")
 country_predicate = URIRef("https://dbpedia.org/property/country")
-country_code_geo_predicate = URIRef("http://www.geonames.org/ontology#countryCode")
-lat_geo_predicate = URIRef("http://www.geonames.org/ontology#lat")
-long_geo_predicate = URIRef("http://www.geonames.org/ontology#long")
+country_code_geo_predicate = URIRef("https://dbpedia.org/property/countryCode")
+lat_geo_predicate = URIRef("http://www.w3.org/2003/01/geo/wgs84_pos#lat")
+long_geo_predicate = URIRef("http://www.w3.org/2003/01/geo/wgs84_pos#long")
 associated_institution_predicate = URIRef("https://semopenalex.org/ontology/hasAssociatedInstitution")
 year_predicate = URIRef("https://semopenalex.org/ontology/year")
 
@@ -302,22 +302,18 @@ def clean_url(nameStr):
                         if not geo_city is None:
                             institutions_graph.add((geo_uri,city_predicate,Literal(geo_city,datatype=XSD.string)))
 
+                        geo_country_code = institution_geo['country_code']
+                        if not geo_country_code is None:
+                            institutions_graph.add((geo_uri,country_code_geo_predicate,Literal(geo_country_code,datatype=XSD.string)))
+
                         geo_geonames_city_id = institution_geo['geonames_city_id']
                         if not geo_geonames_city_id is None:
-                            institutions_graph.add((geo_uri,geoname_id_predicate,Literal(geo_geonames_city_id,datatype=XSD.string)))
+                            institutions_graph.add((geo_uri, OWL.sameAs, URIRef('https://sws.geonames.org/' + geo_geonames_city_id)))
 
                         geo_region = institution_geo['region']
                         if not geo_region is None:
                             institutions_graph.add((geo_uri,region_predicate,Literal(geo_region,datatype=XSD.string)))
 
-                        geo_country_code = institution_geo['country_code']
-                        if not geo_country_code is None:
-                            institutions_graph.add((geo_uri,country_code_geo_predicate,Literal(geo_country_code,datatype=XSD.string)))
-
-                        geo_country = institution_geo['country']
-                        if not geo_country is None:
-                            institutions_graph.add((geo_uri,country_predicate,Literal(geo_country,datatype=XSD.string)))
-
                         geo_latitude = institution_geo['latitude']
                         if not geo_latitude is None:
                             institutions_graph.add((geo_uri,lat_geo_predicate,Literal(geo_latitude,datatype=XSD.float)))
@@ -326,6 +322,9 @@ def clean_url(nameStr):
                         if not geo_longitude == None:
                             institutions_graph.add((geo_uri,long_geo_predicate,Literal(geo_longitude,datatype=XSD.float)))
 
+                        geo_country = institution_geo['country']
+                        if not geo_country is None:
+                            institutions_graph.add((geo_uri,country_predicate,Literal(geo_country,datatype=XSD.string)))
 
                     #international
                     #to do