Update earlgrey to 4.2.3 (bioconda#47627)

* Update earlgrey to 4.2.3 * edit meta.yaml --------- Co-authored-by: mencian <[email protected]>
mencian · May 2, 2024 · fda25f6 · fda25f6
1 parent 627a570
commit fda25f6
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Showing 2 changed files with 11 additions and 10 deletions.
diff --git a/recipes/earlgrey/build.sh b/recipes/earlgrey/build.sh
@@ -13,14 +13,14 @@ mkdir -p ${PACKAGE_HOME}
 
 
 # Put package in share directory
-cp -r * ${PACKAGE_HOME}/
+cp -rf * ${PACKAGE_HOME}/
 
 
 # Install SA-SSR (has to be done here because SA-SSR is an ancient repository without releases)
 git clone --depth 1 https://github.com/ridgelab/SA-SSR
 cd SA-SSR
-make
-cp bin/sa-ssr ${PREFIX}/bin/
+make -j${CPU_COUNT}
+cp -f bin/sa-ssr ${PREFIX}/bin/
 cd ../ && rm -rf SA-SSR/
 
 
@@ -75,5 +75,4 @@ echo "unset PERL5LIB" >> "${PREFIX}/etc/conda/deactivate.d/${PKG_NAME}_deactivat
 
 # Put earlGrey executable in bin
 cd ${PREFIX}/bin
-ln -s ${PACKAGE_HOME}/earlGrey .
-
+ln -sf ${PACKAGE_HOME}/earlGrey .
diff --git a/recipes/earlgrey/meta.yaml b/recipes/earlgrey/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "EarlGrey" %}
-{% set version = "4.1.1" %}
-{% set sha256 = "499b39f0887f6b258a0fc7ac8eb4aa1abbc3fbe2e22d412be245c21e2c896381" %}
+{% set version = "4.2.3" %}
+{% set sha256 = "b69052a83dee56b5a0f6e94666fb9f07e1b9f2607a5c22e39887c6c9c73a4181" %}
 
 package:
   name: {{ name|lower }}
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   run_exports:
     - {{ pin_subpackage('earlgrey', max_pin='x') }}
 
@@ -59,9 +59,11 @@ test:
     - earlGrey -h
 
 about:
-  home: https://github.com/TobyBaril/EarlGrey
-  dev_url: https://github.com/TobyBaril/EarlGrey
+  home: "https://github.com/TobyBaril/EarlGrey"
+  dev_url: "https://github.com/TobyBaril/EarlGrey"
+  doc_url: "https://github.com/TobyBaril/EarlGrey/blob/main/README.md"
   license: OSL-2.1
+  license_file: LICENSE
   summary: "Earl Grey: A fully automated TE curation and annotation pipeline"
   description: |
     Earl Grey is a full-automated transposable element (TE) annotation pipeline,