Update lighter to 1.1.3 (bioconda#47487)

* Update lighter to 1.1.3 * add run_exports * fix typo --------- Co-authored-by: mencian <[email protected]>
mencian · Apr 26, 2024 · c6a62f0 · c6a62f0
1 parent 7ea7748
commit c6a62f0
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Showing 2 changed files with 16 additions and 10 deletions.
diff --git a/recipes/lighter/build.sh b/recipes/lighter/build.sh
@@ -1,5 +1,7 @@
-#!/bin/sh
+#!/bin/bash
 
-mkdir -p $PREFIX/bin
-make CXX=${CXX} CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}"
-cp lighter $PREFIX/bin
+mkdir -p ${PREFIX}/bin
+
+make CXX="${CXX}" CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include" LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+cp -f lighter ${PREFIX}/bin
diff --git a/recipes/lighter/meta.yaml b/recipes/lighter/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "Lighter" %}
-{% set version = "1.1.2" %}
-{% set sha256 = "89abc34137beffc43382fbe53deb25c3c2f5cee7e6ca2b7f669931d70065993a" %}
+{% set version = "1.1.3" %}
+{% set sha256 = "c8a251c410805f82dad77e40661f0faf14ec82dedb3ff717094ba8ff4ef94465" %}
 
 package:
   name: '{{ name|lower }}'
@@ -13,16 +13,16 @@ source:
     - 0001-makefile.patch
 
 build:
-  number: 6
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('lighter', max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
   host:
     - zlib
-  run:
-    - zlib
 
 test:
   commands:
@@ -31,10 +31,14 @@ test:
 
 about:
   home: https://github.com/mourisl/Lighter
-  license: GPLv3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Lighter is a kmer-based error correction method for whole genome sequencing data
+  dev_url: https://github.com/mourisl/Lighter
 
 extra:
   identifiers:
     - biotools:{{ name }}
+    - doi:10.1186/s13059-014-0509-9
+    - usegalaxy-eu:lighter