Add orthoflow (bioconda#43587)

* Add orthoflow v0.2.0 * Fix description key * Fix description * Relax Python version requirements * Remove pip check Pin Pandas <2.0.0 * Remove pip from test requirements Remove pytest command (tests directory is not bundled with the PyPI distribution) * depend on snakemake-minimal --------- Co-authored-by: Joshua Zhuang <[email protected]>
mencian · Oct 15, 2023 · 7d20434 · 7d20434
1 parent cb69bc3
commit 7d20434
Showing 1 changed file with 66 additions and 0 deletions.
diff --git a/recipes/orthoflow/meta.yaml b/recipes/orthoflow/meta.yaml
@@ -0,0 +1,66 @@
+{% set name = "orthoflow" %}
+{% set version = "0.2.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/orthoflow-{{ version }}.tar.gz
+  sha256: 60e5c8bf6ba3f5d3b6d2e3fa9953f4196c117b4e656c9e5c709a28a397451d93
+
+build:
+  entry_points:
+    - orthoflow = orthoflow.main:app
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python
+    - setuptools
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python
+    - snakemake-minimal >=7.0.0
+    - pandas >=1.2.5,<2.0.0
+    - typer >=0.4.1
+    - flask >=2.1.2
+    - biopython >=1.79.0
+    - jinja2 >=3.1.2
+    - pydot >=1.4.2
+    - appdirs >=1.4.4
+    - joblib >=1.2.0
+    - toml >=0.10.2
+    - phytest >=1.2.0
+    - rich >=13.3.3
+
+test:
+  imports:
+    - orthoflow
+  commands:
+    - orthoflow --help
+
+about:
+  home: https://github.com/rbturnbull/orthoflow
+  summary: Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
+  license: Apache-2.0
+  license_file: LICENSE
+  dev_url: https://github.com/rbturnbull/orthoflow
+  doc_url: https://rbturnbull.github.io/orthoflow/
+  description: |
+
+    # Orthoflow - end-to-end phylogenomic inference
+
+    Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
+
+    For more information, visit the GitHub or the documentation page.
+
+extra:
+  recipe-maintainers:
+    - rbturnull
+    - vinisalazar