Update RepeatScout to 1.0.7 (bioconda#52428)

* Update RepeatScout to 1.0.7

* Update build.sh

* Update meta.yaml

* Update meta.yaml

recipes/repeatscout/build.sh

@@ -1,6 +1,13 @@
-#!/bin/sh
+#!/bin/bash
 set -x -e
+
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
 mkdir -p ${PREFIX}/bin
-make CC=$CC
+make CC="${CC}" -j"${CPU_COUNT}"
 
-cp RepeatScout build_lmer_table compare-out-to-gff.prl filter-stage-1.prl filter-stage-2.prl merge-lmer-tables.prl ${PREFIX}/bin
+install -v -m 0755 RepeatScout ${PREFIX}/bin
+install -v -m 0755 build_lmer_table ${PREFIX}/bin
+cp -rf compare-out-to-gff.prl filter-stage-1.prl filter-stage-2.prl merge-lmer-tables.prl ${PREFIX}/bin

recipes/repeatscout/meta.yaml

@@ -1,15 +1,18 @@
-{% set version = "1.0.6" %}
+{% set name = "repeatscout" %}
+{% set version = "1.0.7" %}
 
 package:
-  name: "repeatscout"
-  version: "{{ version }}"
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: http://www.repeatmasker.org/RepeatScout-{{ version }}.tar.gz
-  sha256: 31a44cf648d78356aec585ee5d3baf936d01eaba43aed382d9ac2d764e55b716
+  url: https://github.com/Dfam-consortium/RepeatScout/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: aec393f87aa03efdceb9b664e43de102ed7d83ed1c2cbac3ac53e8cda96e08f9
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('repeatscout', max_pin="x") }}
 
 requirements:
   build:
@@ -31,6 +34,16 @@ test:
     - compare-out-to-gff.prl -h 2>&1 | grep -i repeatmasker
 
 about:
-  home: http://repeatscout.bioprojects.org
-  license: GPL
+  home: "https://github.com/Dfam-consortium/RepeatScout"
+  license: CC0
+  license_file: LICENSE
   summary: 'De novo identification of repeat families in large genomes.'
+  dev_url: "https://github.com/Dfam-consortium/RepeatScout"
+  doc_url: "https://github.com/Dfam-consortium/RepeatScout/blob/v{{ version }}/README.md"
+
+extra:
+  identifiers:
+    - biotools:RepeatScout
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64