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Add echidna package to bioconda. See https://pypi.org/project/sc-e… (b…
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…ioconda#52820)

* Adding echidna package to bioconda. See https://pypi.org/project/sc-echidna/1.0.0/

* fixed meta.yaml noarch

* fixed the url

* add poetry

* license fix

* update sha256

* fix recipe maintainers + authors, run_exports SemVer ctrl
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wgobrien authored Dec 17, 2024
1 parent 1c7a2f2 commit 3561d75
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57 changes: 57 additions & 0 deletions recipes/echidna/meta.yaml
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{% set name = "echidna" %}
{% set pname = "sc_echidna" %}
{% set version = "1.0.2" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: "https://pypi.io/packages/source/{{ pname[0] }}/{{ pname }}/{{ pname }}-{{ version }}.tar.gz"
sha256: 0e355842d01899c868de50b3a61356f22e5edfac22b57cdbe1d388204c2e2065

build:
noarch: python
number: 0
script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
run_exports:
- {{ pin_subpackage(name, max_pin="x") }}

requirements:
host:
- python >=3.10
- pip
- poetry
run:
- python >=3.10
- scanpy >=1.10
- pandas
- seaborn
- hmmlearn
- pyro-ppl >=1.9.1
- graphviz
- requests
- scikit-learn
- leidenalg

test:
imports:
- echidna

about:
home: https://github.com/azizilab/echidna
license: MIT
license_file: LICENSE
summary: "Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation."

extra:
identifiers:
- biotools:echidna
recipe-maintainers:
- "wgobrien"
- "mingkz"
authors:
- "Joy Linyue Fan"
- "Mingxuan Zhang"
- "William O'Brien"
- "Joshua Myers"

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