forked from bioconda/bioconda-recipes
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add echidna package to bioconda. See https://pypi.org/project/sc-e… (b…
…ioconda#52820) * Adding echidna package to bioconda. See https://pypi.org/project/sc-echidna/1.0.0/ * fixed meta.yaml noarch * fixed the url * add poetry * license fix * update sha256 * fix recipe maintainers + authors, run_exports SemVer ctrl
- Loading branch information
Showing
1 changed file
with
57 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,57 @@ | ||
{% set name = "echidna" %} | ||
{% set pname = "sc_echidna" %} | ||
{% set version = "1.0.2" %} | ||
|
||
package: | ||
name: "{{ name|lower }}" | ||
version: "{{ version }}" | ||
|
||
source: | ||
url: "https://pypi.io/packages/source/{{ pname[0] }}/{{ pname }}/{{ pname }}-{{ version }}.tar.gz" | ||
sha256: 0e355842d01899c868de50b3a61356f22e5edfac22b57cdbe1d388204c2e2065 | ||
|
||
build: | ||
noarch: python | ||
number: 0 | ||
script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv" | ||
run_exports: | ||
- {{ pin_subpackage(name, max_pin="x") }} | ||
|
||
requirements: | ||
host: | ||
- python >=3.10 | ||
- pip | ||
- poetry | ||
run: | ||
- python >=3.10 | ||
- scanpy >=1.10 | ||
- pandas | ||
- seaborn | ||
- hmmlearn | ||
- pyro-ppl >=1.9.1 | ||
- graphviz | ||
- requests | ||
- scikit-learn | ||
- leidenalg | ||
|
||
test: | ||
imports: | ||
- echidna | ||
|
||
about: | ||
home: https://github.com/azizilab/echidna | ||
license: MIT | ||
license_file: LICENSE | ||
summary: "Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation." | ||
|
||
extra: | ||
identifiers: | ||
- biotools:echidna | ||
recipe-maintainers: | ||
- "wgobrien" | ||
- "mingkz" | ||
authors: | ||
- "Joy Linyue Fan" | ||
- "Mingxuan Zhang" | ||
- "William O'Brien" | ||
- "Joshua Myers" |