Update last to 1544 (bioconda#48408)

mencian · Jun 11, 2024 · 2f533c8 · 2f533c8
1 parent 4208b20
commit 2f533c8
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Showing 2 changed files with 15 additions and 9 deletions.
diff --git a/recipes/last/build.sh b/recipes/last/build.sh
@@ -8,4 +8,4 @@ case ${ARCH} in
     *) ARCH_FLAGS="" ;;
 esac
 
-make install CXXFLAGS="$CXXFLAGS ${ARCH_FLAGS} -pthread" prefix=$PREFIX
+make install CXXFLAGS="${CXXFLAGS} -O3 ${ARCH_FLAGS} -pthread -I${PREFIX}/include" prefix="${PREFIX}"
diff --git a/recipes/last/meta.yaml b/recipes/last/meta.yaml
@@ -1,16 +1,16 @@
 {% set name = "LAST" %}
-{% set version = "1542" %}
+{% set version = "1544" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://gitlab.com/mcfrith/last/-/archive/{{ version }}/last-{{ version }}.zip
-  sha256: ee26e762fe76d167241f7e85b5e72ef8d17ed243c405e38dbbd06de97003596a
+  url: https://gitlab.com/mcfrith/last/-/archive/{{ version }}/last-{{ version }}.tar.gz
+  sha256: 6decf0698c0dab61c76af1b8a2594238f747e5c559c66ae93535c9efd07addc7
 
 build:
-  number: 1
+  number: 0
   run_exports:
     - {{ pin_subpackage('last', max_pin=None) }}
 
@@ -22,10 +22,10 @@ requirements:
   host:
     - zlib
   run:
-    - zlib
     - python
     - pillow
     - parallel
+    - zlib
 
 test:
   commands:
@@ -50,12 +50,14 @@ test:
     - parallel-fastq -h
 
 about:
-  home: https://gitlab.com/mcfrith/last
-  license: GPL-3.0-or-later
+  home: "https://gitlab.com/mcfrith/last"
+  license: "GPL-3.0-or-later"
   license_family: GPL3
-  license_file: COPYING.txt
+  license_file: "COPYING.txt"
   summary: "LAST finds & aligns related regions of sequences."
   description: "LAST finds & aligns related regions of sequences. It is designed for moderately large data (e.g. genomes, DNA reads, proteomes).  It's especially good at: finding rearrangements and recombinations; finding DNA-versus-protein related regions; unusual data like AT-rich DNA; sensitive DNA-DNA search."
+  dev_url: "https://gitlab.com/mcfrith/last"
+  doc_url: "https://gitlab.com/mcfrith/last/-/blob/main/doc/last-cookbook.rst"
 
 extra:
   additional-platforms:
@@ -64,3 +66,7 @@ extra:
     extended-base: True
   identifiers:
     - biotools:last
+    - usegalaxy-eu:last_train
+    - usegalaxy-eu:last_al
+    - usegalaxy-eu:last_db
+    - usegalaxy-eu:last_split