GitHub - mbnmbn00/fGAP: fGAP is a gene prediction pipeline specialized with fungal genomes using genome assembly and RNA-seq reads

mbnmbn00 / fGAP Public

fGAP is a gene prediction pipeline specialized with fungal genomes using genome assembly and RNA-seq reads

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Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
external		external
catch_bad_genes.py		catch_bad_genes.py
check_dependencies.py		check_dependencies.py
copy_output.py		copy_output.py
create_markdown.py		create_markdown.py
download_sister_orgs.py		download_sister_orgs.py
fgap.py		fgap.py
filter_gff3s.py		filter_gff3s.py
import_blast.py		import_blast.py
import_busco.py		import_busco.py
import_pfam.py		import_pfam.py
make_nr_prot.py		make_nr_prot.py
run_augustus.py		run_augustus.py
run_blastp.py		run_blastp.py
run_braker1.py		run_braker1.py
run_busco.py		run_busco.py
run_hisat2.py		run_hisat2.py
run_interproscan_pfam.py		run_interproscan_pfam.py
run_maker.py		run_maker.py
run_repeat_modeler.py		run_repeat_modeler.py
run_trinity.py		run_trinity.py
set_logging.py		set_logging.py
sftp-config.json		sftp-config.json