Homecage Quantification

This project contains code to establish a monitoring system based on raspberry Pi 4 and cameras.

If using FED3 devices to quantify food intake, you can also find a data analysis tool in this repository.

Main aspects of Homecage quantification

Acquire video
- Stream to a local network to be visualized by other computers in the network (via IP).
- Record video to local file.
Perform optical flow quantification on video.
Record mouse temperature using FLIR lepton 3.5 and openMV.

For detailed usage refer to the Wiki page.

This is a preliminary release. Please file issues to improve the functioning.

Name		Name	Last commit message	Last commit date
Latest commit History 175 Commits
QC		QC
desktop_entries		desktop_entries
docs_img		docs_img
flow_data_analysis		flow_data_analysis
renv		renv
rpi_network_app		rpi_network_app
templates		templates
thermal_camera		thermal_camera
.Rprofile		.Rprofile
.gitignore		.gitignore
DOCS.md		DOCS.md
GUI.py		GUI.py
README.md		README.md
animate_plot.py		animate_plot.py
auto_git_pull.py		auto_git_pull.py
camera.py		camera.py
clean_cameras.py		clean_cameras.py
config.json		config.json
dynamic_object_detector.py		dynamic_object_detector.py
get_ip.py		get_ip.py
links		links
main.py		main.py
motiondetection_pyimagesearch.py		motiondetection_pyimagesearch.py
opt_flow.py		opt_flow.py
preview_camera.py		preview_camera.py
record_event.py		record_event.py
renv.lock		renv.lock
send_ip.sh		send_ip.sh
send_movement_data.py		send_movement_data.py
send_thermal_data.py		send_thermal_data.py
setup.sh		setup.sh
setup_cron.py		setup_cron.py
setup_ssh.sh		setup_ssh.sh
start_thermal.py		start_thermal.py
trigger_thermal.py		trigger_thermal.py
videowriter.py		videowriter.py