Skip to content

Commit

Permalink
nit
Browse files Browse the repository at this point in the history
  • Loading branch information
csbrasnett committed Nov 18, 2024
1 parent 1e82f1d commit 876f48c
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions doc/source/tutorials/basic_usage.rst
Original file line number Diff line number Diff line change
Expand Up @@ -154,7 +154,7 @@ Molecule naming
---------------

By default, the molecules in your system will be named `molecule_{0..n}`
(i.e. `molecule_0`, `molecule_1`, etc.), where `n` is the number of molecules you have in the system.
(*i.e.* `molecule_0`, `molecule_1`, etc.), where `n` is the number of molecules you have in the system.

To change this, the `-name` flag can be used so that your the prefix is specified how you want. For
example, the heterotetrameric protein `Sorbitol dehydrogenase <https://www.rcsb.org/structure/1pl7>`_
Expand All @@ -168,7 +168,7 @@ the `-name` flag can be used:

In this case, the molecules will be renamed to `SDH_{0..n}` to indicate that they form Sorbitol
dehydrogenase. Note that this feature is also important when the Gō model is used to ensure
unique atom names for the Gō sites generated.
unique atom names for the Gō sites are generated.

Citations
---------
Expand Down

0 comments on commit 876f48c

Please sign in to comment.